New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1561749	30 (0.720)	3 (0.080)	3/252	NT	9.9%	coding (733/1551 nt)	ddpA	putative D,D‑dipeptide ABC transporter periplasmic binding protein
	?	NC_000913	= 1561763	26 (0.660)					coding (719/1551 nt)	ddpA	putative D,D‑dipeptide ABC transporter periplasmic binding protein

TGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCTTTTTGCCAGCTTTTCAGCATAAATGGTCCGGAACC  >  NC_000913/1561629‑1561902                                                                                                                                       |                                                                                                                                            tGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACgg                                                                                                                                     >  1:417536/1‑143 (MQ=255)   ttATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAGTGTCGCCACGGGAGAGCTGCAGGCGACGGGa                                                                                                                                   >  2:505116/1‑143 (MQ=255)         agatacagataGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCACTGTCAATGTCGCCACGGGAGAGCTGCAGGCGGCGGGAGGCAcc                                                                                                                             >  2:586287/1‑142 (MQ=255)              cagataGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCAc                                                                                                                        <  1:41524/143‑1 (MQ=255)                      tAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAAtt                                                                                                                <  1:662236/143‑1 (MQ=255)                      tAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAAtt                                                                                                                >  1:517829/1‑143 (MQ=255)                           cgcAGTGACGGATACTCTGCCACATTGACTTTATTGTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTAc                                                                                                           <  1:753421/143‑1 (MQ=255)                                  aCGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGACCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCTCTAcc                                                                                                    >  1:587651/1‑143 (MQ=255)                                    ggATACTCTGCCCCATTGACTTTACTTGCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCg                                                                                                  <  1:563537/143‑1 (MQ=255)                                              ccACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTc                                                                                        <  1:233896/143‑1 (MQ=255)                                               cacaTTGACTTTAGTTTCCGGCTTAAGGGCGTTGAGTTGATCCGCTGGCAGCGCAGAGGCAATGTCAATGTCGCCACGGGAGAGATGCAGGCGACGGGAGGCACTTTCACCCATAATTTTTACCGATTCCGGTTTGAAGTTCg                                                                                       <  2:207673/143‑1 (MQ=255)                                                      aCTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTCtt                                                                                >  1:322054/1‑143 (MQ=255)                                                      aCTTTATTTTCCGGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTGTACCGATACCCGTTTGAAGTTCGGTTTAtt                                                                                <  1:650801/143‑1 (MQ=255)                                                               tCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTa                                                                       >  2:217247/1‑143 (MQ=255)                                                                    cTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCg                                                                  >  1:603431/1‑143 (MQ=255)                                                                    cTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACACGCTTGAAGTTCGGTATATTGCGTGGGTCATGCg                                                                  >  2:692519/1‑143 (MQ=255)                                                                     gtCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCgg                                                                 <  1:708878/142‑1 (MQ=255)                                                                      gcAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGa                                                                <  2:417536/142‑1 (MQ=255)                                                                        aGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGGTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGAtt                                                              >  2:693952/1‑143 (MQ=255)                                                                         gggCGTTGGGTTGATCGACCGGCAGCGCCTCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGTAGTTTCACCAATAATTTTTGCCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGAttt                                                             <  1:780194/143‑1 (MQ=255)                                                                            cGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTCACGCAACAAATGTATAGTTCGGTTTATTGCCTGGGTAATGCGGGTTTGGc                                                          >  2:574908/1‑143 (MQ=255)                                                                             gttgagttgaTCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCa                                                         <  2:725231/143‑1 (MQ=255)                                                                                    cgaTCCACCGGCAGCGCATCGGCAATGTCATTGTCGCCACGGTAGAGCTGCAGGTGACGGGAGGCACTTCCACCAATAATTTTTACCGATACCCGTTTGACGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCTCCAGAAc                                                  <  2:235157/142‑1 (MQ=255)                                                                                       tCCACCGGCAGCGCATGGGCAATTTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGAGACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTaa                                               <  2:782754/143‑1 (MQ=255)                                                                                                  cgcATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGGCGGGAGGCACTTTCACCACTAAATGTTACCGATACCCGATTGAAGTACGGTCTATTGCCCGGGTAGTGCGGATTGGGCACCAGAACGAGTTGCTGCCCtt                                    >  2:38785/1‑143 (MQ=255)                                                                                                     aTCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATACTTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACGttttt                                 <  2:678505/143‑1 (MQ=255)                                                                                                     aTCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGCTTGAAGTTCGGCTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCttttt                                 >  2:50177/1‑143 (MQ=255)                                                                                                       cGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCTTTTTGc                               >  1:271510/1‑143 (MQ=255)                                                                                                                 aatgtcGCCACGGGAGAGCTGCAggcgacattgacattgccgatgcgctgccggtggatcaactcaacgccctgaagcaggaaaataaagtcaatgtggcagagtatccgtcactgcgcgttacctatctgtatctgaataac                     <  1:775791‑M2/143‑121 (MQ=255)                                                                                                                  atgtcGCCACGGGAGAGCTGCAggcgacattgacattgccgatgcgctgccggtggatcaactcaacgccctgaagcaggaaaataaa                                                                           >  2:295602‑M2/1‑22 (MQ=255)                                                                                                                  atgtcGCCACGGGAGAGCTGCAggcgacattgacattgccgatgcgctgccggtggatcaactcaacgccctgaagcaggaaaataaa                                                                           <  1:295602‑M2/88‑67 (MQ=255)                                                                                                                                   cTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCTTTTTGCCAGCTTTTCAGCAAAAATGGTCCGGacc   >  2:476328/1‑141 (MQ=255)                                                                                                                                    tGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGAATTTAACAAAAAAAAAAATAGCTGACCTTTTTGCCAGATTTTCAGCAAAAATGGTGCGGaaac  >  1:502409/1‑141 (MQ=255)                                                                                                                                       |                                                                                                                                            TGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCTTTTTGCCAGCTTTTCAGCATAAATGGTCCGGAACC  >  NC_000913/1561629‑1561902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.