New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3883262 =	38 (0.920)	3 (0.080)	3/252	NT	7.7%	coding (468/1404 nt)	dnaA	chromosomal replication initiator protein DnaA
	?	NC_000913	3883286 =	36 (0.910)					coding (444/1404 nt)	dnaA	chromosomal replication initiator protein DnaA

GGAGTGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAG  >  NC_000913/3883121‑3883404                                                                                                                                              |                                                                                                                                               gcgcaaacgcagccgcaacgtgctgcgccttctacgcgctcaggttgggataacgtcccggttccggcataaccgacctatcgttctaacgtaaacgtcaaacacacggttgataacttcgttgaaggtaaatctaaccaaCt                                                                                                                                               >  1:33915‑M1/142‑143 (MQ=255)  gAGTGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTGCCCCCCCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTg                                                                                                                                              <  1:808953/143‑1 (MQ=255)   aGTGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTgg                                                                                                                                             <  1:519829/143‑1 (MQ=255)     tGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACACACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATCAAGGAACAACGGGTCATACGCACCACCAGCGTTCTCCACCCCCTGGCg                                                                                                                                           >  2:717743/1‑143 (MQ=255)       cATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAg                                                                                                                                         >  1:494538/1‑143 (MQ=255)              aCCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCcgccgc                                                                                                                                  >  1:666918/1‑143 (MQ=255)                          cgccttctacgcgctcaggttgggataacgccccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccacCTGGCGAGCCGCCGCGCGCGCCAGTTg                                                                                                                      >  1:715247‑M1/117‑143 (MQ=255)                           tCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGGTgg                                                                                                                     <  1:625103/143‑1 (MQ=255)                             ggCTTGCGCGCCATAATGCCGTTAACCACCGCAGGCAGCAGGCGAGTTTTACCCAGACCCGTGCCGCCATAGAAGAACAACGGGTTATAGGCACCGCCCGGGTTCGCCGCAACCTGGCGAGCCGACGCGCGCGCCAGCTGGtg                                                                                                                   >  2:714404/1‑142 (MQ=255)                                      gcCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGCAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTAcc                                                                                                          >  1:707170/1‑143 (MQ=255)                                           ggttgggataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCaa                                                                                                     >  1:48654‑M1/100‑143 (MQ=255)                                           aaTGCCGTTACCCACCGCATGCAGCAGGTGAGTTTCACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCaa                                                                                                     <  1:641358/143‑1 (MQ=255)                                               ccGTTACCCACCGCATTCAGCAGGTGAGTTTTACCCAGACCCGGGCCGCCACAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGaa                                                                                                 <  1:5051/143‑1 (MQ=255)                                               ccGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCCCCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCCGTTGGTTAGATTTACCTTCAACGaa                                                                                                 >  2:558370/1‑143 (MQ=255)                                                    aCCCTCCGCATGCAGCAGGTGAGTTGTACTCAGGCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTAt                                                                                            <  2:471491/143‑1 (MQ=255)                                                        tcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCaaa                                                                                        >  1:624327‑M1/87‑143 (MQ=255)                                                            cATGCAGCAGGTAAGTTTTAACCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCGAGGGTTCTCCGCCACCTGGCGACCCGCCGCGCGCGCCAGATGGATAGAATTACCGTCACCGAAGCTATCAAACgag                                                                                    >  2:621797/1‑141 (MQ=255)                                                                cagcagGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGtt                                                                                >  1:643205/1‑143 (MQ=255)                                                                    agGTCAGTTTTCCCCAACCCCGTCCCGCCATAAAGGAACAACGGGCTATAGCCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGAc                                                                            <  1:332098/143‑1 (MQ=255)                                                                       tGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGtt                                                                         >  1:130176/1‑143 (MQ=255)                                                                          gtgttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGTGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTAc                                                                      <  1:682097/140‑1 (MQ=255)                                                                           ttttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGGTAGATTTACCTTCACCGCAGTTATCAACCGTGTGTTTGCCGTTTGCg                                                                     >  1:616111/1‑143 (MQ=255)                                                                           ttttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCAAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAAAGCGTGTTTGACGTTTACg                                                                     >  1:45044/1‑143 (MQ=255)                                                                               aCCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGCTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAg                                                                 >  2:266343/1‑143 (MQ=255)                                                                                 ccAGACGCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGGTTTACCTTCCACGCAGTTATCAAACGGGCGTTGGACGTTTACGTCAGaa                                                               >  2:761651/1‑143 (MQ=255)                                                                                 ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCGGTGTTTATCCGCAACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa                                                               <  1:151733/143‑1 (MQ=255)                                                                                 ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGCGCCTCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCACACGTGTGTTTGACGTTTACGTTAGaa                                                               >  1:512601/1‑143 (MQ=255)                                                                                 ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTAGCAAACGTGCGTTTGGCGTTTCCGTTAGaa                                                               >  2:385115/1‑143 (MQ=255)                                                                                    gACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACgc                                                            >  2:59894/1‑142 (MQ=255)                                                                                     aCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTCACGTTAGAACGAt                                                           >  2:196233/1‑143 (MQ=255)                                                                                            ccgtcATGAGGGAACAGCGGGGTATGGGCACCGGCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGGCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCgg                                                    <  2:51011/143‑1 (MQ=255)                                                                                              gccATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGGTTACGTTAGAACGATAGGTCGGtt                                                  >  1:658523/1‑143 (MQ=255)                                                                                                cATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCt                                                >  1:389419/1‑143 (MQ=255)                                                                                                     aGGAACAACGGGGTAGAGGGACCGCCAGGGTTATCCGCCACCTGGCGAGACGACGCACGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGCTCTgccgg                                           <  2:653684/143‑1 (MQ=255)                                                                                                             cGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGGTATCAAACGCGGGTTGGACGTTCTCGGCCGAACGATAGGTAGGTTCTgccggcgccgggc                                   >  2:572898/1‑142 (MQ=255)                                                                                                                gTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGGTGGTTAGCTTTACCTTCAACGAAGTTATCACACGTGTGTTTGACGTTTACGTTAGAACGATAGGGCGGTTCTGCCGGGGCCGGGACGt                                >  1:98741/1‑143 (MQ=255)                                                                                                                 ttATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGtt                               >  1:682331/1‑143 (MQ=255)                                                                                                                             ccAGGGTTATCCGCCACCTGGCGAGCCGCCGCGTGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGa                   >  1:721261/1‑143 (MQ=255)                                                                                                                             ccAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGATAGATTTACCTTCAACGAAGTTATCCACCGTGTGTTTGACGTTTACCTTAGACCGATAGGTCGAATCTGCCGGGGCCGGGACGTTATCCCAATCTgc                   >  1:254601/1‑142 (MQ=255)                                                                                                                             ccAGGGTCATCGGCCGCGTGGCGGGCGGCCGCGCGCGCGAGTTGGTTAGCTTTACCGTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTCGCACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGa                   <  1:780311/143‑1 (MQ=255)                                                                                                                               aGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATACCAACCTGAgc                 >  2:729967/1‑143 (MQ=255)                                                                                                                                  gTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGGGcgcg              >  2:112366/1‑143 (MQ=255)                                                                                                                                     aTCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAg           >  1:497731/1‑143 (MQ=255)                                                                                                                                       ccGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGaa         >  2:260724/1‑143 (MQ=255)                                                                                                                                             ccTGGCGAGCCGCCGCGCGCGCCAGTGGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTCAGAACGATATGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCgca   <  1:291463/143‑1 (MQ=255)                                                                                                                                             ccTGGCGAGCCGCCGCGCGCGCCAGCTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCgca   <  1:237095/143‑1 (MQ=255)                                                                                                                                              CTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGTCCGGGACGTTATCCCAACCTGATCGCGTAGAAGGCgcag  <  1:158929‑M1/143‑1 (MQ=255)                                                                                                                                              CTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCgcag  <  1:791599‑M1/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               GGAGTGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAG  >  NC_000913/3883121‑3883404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.