New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3883262 =	38 (0.920)	3 (0.080)	3/252	NT	7.7%	coding (468/1404 nt)	dnaA	chromosomal replication initiator protein DnaA
	?	NC_000913	3883286 =	36 (0.910)					coding (444/1404 nt)	dnaA	chromosomal replication initiator protein DnaA

TTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGC  >  NC_000913/3883146‑3883426                                                                                                                                             |                                                                                                                                             cgccttctacgcgctcaggttgggataacgccccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccacCTGGCGAGCCGCCGCGCGCGCCAGTTg                                                                                                                                            >  1:715247‑M1/117‑143 (MQ=255)  tCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGGTgg                                                                                                                                           <  1:625103/143‑1 (MQ=255)    ggCTTGCGCGCCATAATGCCGTTAACCACCGCAGGCAGCAGGCGAGTTTTACCCAGACCCGTGCCGCCATAGAAGAACAACGGGTTATAGGCACCGCCCGGGTTCGCCGCAACCTGGCGAGCCGACGCGCGCGCCAGCTGGtg                                                                                                                                         >  2:714404/1‑142 (MQ=255)             gcCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGCAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTAcc                                                                                                                                >  1:707170/1‑143 (MQ=255)                  ggttgggataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCaa                                                                                                                           >  1:48654‑M1/100‑143 (MQ=255)                  aaTGCCGTTACCCACCGCATGCAGCAGGTGAGTTTCACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCaa                                                                                                                           <  1:641358/143‑1 (MQ=255)                      ccGTTACCCACCGCATTCAGCAGGTGAGTTTTACCCAGACCCGGGCCGCCACAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGaa                                                                                                                       <  1:5051/143‑1 (MQ=255)                      ccGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCCCCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCCGTTGGTTAGATTTACCTTCAACGaa                                                                                                                       >  2:558370/1‑143 (MQ=255)                           aCCCTCCGCATGCAGCAGGTGAGTTGTACTCAGGCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTAt                                                                                                                  <  2:471491/143‑1 (MQ=255)                               tcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCaaa                                                                                                              >  1:624327‑M1/87‑143 (MQ=255)                                   cATGCAGCAGGTAAGTTTTAACCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCGAGGGTTCTCCGCCACCTGGCGACCCGCCGCGCGCGCCAGATGGATAGAATTACCGTCACCGAAGCTATCAAACgag                                                                                                          >  2:621797/1‑141 (MQ=255)                                       cagcagGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGtt                                                                                                      >  1:643205/1‑143 (MQ=255)                                           agGTCAGTTTTCCCCAACCCCGTCCCGCCATAAAGGAACAACGGGCTATAGCCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGAc                                                                                                  <  1:332098/143‑1 (MQ=255)                                              tGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGtt                                                                                               >  1:130176/1‑143 (MQ=255)                                                 gtgttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGTGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTAc                                                                                            <  1:682097/140‑1 (MQ=255)                                                  ttttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGGTAGATTTACCTTCACCGCAGTTATCAACCGTGTGTTTGCCGTTTGCg                                                                                           >  1:616111/1‑143 (MQ=255)                                                  ttttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCAAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAAAGCGTGTTTGACGTTTACg                                                                                           >  1:45044/1‑143 (MQ=255)                                                      aCCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGCTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAg                                                                                       >  2:266343/1‑143 (MQ=255)                                                        ccAGACGCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGGTTTACCTTCCACGCAGTTATCAAACGGGCGTTGGACGTTTACGTCAGaa                                                                                     >  2:761651/1‑143 (MQ=255)                                                        ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCGGTGTTTATCCGCAACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa                                                                                     <  1:151733/143‑1 (MQ=255)                                                        ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGCGCCTCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCACACGTGTGTTTGACGTTTACGTTAGaa                                                                                     >  1:512601/1‑143 (MQ=255)                                                        ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTAGCAAACGTGCGTTTGGCGTTTCCGTTAGaa                                                                                     >  2:385115/1‑143 (MQ=255)                                                           gACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACgc                                                                                  >  2:59894/1‑142 (MQ=255)                                                            aCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTCACGTTAGAACGAt                                                                                 >  2:196233/1‑143 (MQ=255)                                                                   ccgtcATGAGGGAACAGCGGGGTATGGGCACCGGCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGGCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCgg                                                                          <  2:51011/143‑1 (MQ=255)                                                                     gccATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGGTTACGTTAGAACGATAGGTCGGtt                                                                        >  1:658523/1‑143 (MQ=255)                                                                       cATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCt                                                                      >  1:389419/1‑143 (MQ=255)                                                                            aGGAACAACGGGGTAGAGGGACCGCCAGGGTTATCCGCCACCTGGCGAGACGACGCACGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGCTCTgccgg                                                                 <  2:653684/143‑1 (MQ=255)                                                                                    tttgataacttcgttgaaggtaaatctaaccaactggcgcgcgcggcggctcgccagTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGa                                                         >  1:624327‑M2/58‑143 (MQ=255)                                                                                    cGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGGTATCAAACGCGGGTTGGACGTTCTCGGCCGAACGATAGGTAGGTTCTgccggcgccgggc                                                         >  2:572898/1‑142 (MQ=255)                                                                                       gTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGGTGGTTAGCTTTACCTTCAACGAAGTTATCACACGTGTGTTTGACGTTTACGTTAGAACGATAGGGCGGTTCTGCCGGGGCCGGGACGt                                                      >  1:98741/1‑143 (MQ=255)                                                                                        ttATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGtt                                                     >  1:682331/1‑143 (MQ=255)                                                                                                 ttgaaggtaaatctaaccaactggcgcgcgcggcggctcgccagTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAAcc                                            >  1:48654‑M2/45‑143 (MQ=255)                                                                                                    ccAGGGTTATCCGCCACCTGGCGAGCCGCCGCGTGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGa                                         >  1:721261/1‑143 (MQ=255)                                                                                                    ccAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGATAGATTTACCTTCAACGAAGTTATCCACCGTGTGTTTGACGTTTACCTTAGACCGATAGGTCGAATCTGCCGGGGCCGGGACGTTATCCCAATCTgc                                         >  1:254601/1‑142 (MQ=255)                                                                                                    ccAGGGTCATCGGCCGCGTGGCGGGCGGCCGCGCGCGCGAGTTGGTTAGCTTTACCGTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTCGCACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGa                                         <  1:780311/143‑1 (MQ=255)                                                                                                      aGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATACCAACCTGAgc                                       >  2:729967/1‑143 (MQ=255)                                                                                                         gTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGGGcgcg                                    >  2:112366/1‑143 (MQ=255)                                                                                                            aTCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAg                                 >  1:497731/1‑143 (MQ=255)                                                                                                              ccGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGaa                               >  2:260724/1‑143 (MQ=255)                                                                                                                  caactggcgcgcgcggcggctcgccagGTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGGCGTTATCCCAACCTGAGCGCGTAGAAGgcg                           >  1:715247‑M2/28‑143 (MQ=255)                                                                                                                    ccTGGCGAGCCGCCGCGCGCGCCAGTGGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTCAGAACGATATGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCgca                         <  1:291463/143‑1 (MQ=255)                                                                                                                    ccTGGCGAGCCGCCGCGCGCGCCAGCTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCgca                         <  1:237095/143‑1 (MQ=255)                                                                                                                     CTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGTCCGGGACGTTATCCCAACCTGATCGCGTAGAAGGCgcag                        <  1:158929‑M1/143‑1 (MQ=255)                                                                                                                     CTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCgcag                        <  1:791599‑M1/143‑1 (MQ=255)                                                                                                                               gccgcGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCgg              <  1:308224/143‑1 (MQ=255)                                                                                                                                           agTTGGTTAGATTTACCTTCAACGAAGTTATCAACCGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTATGCCGGAACCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTgcgc  >  1:33915‑M2/3‑143 (MQ=255)                                                                                                                                             |                                                                                                                                             TTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGC  >  NC_000913/3883146‑3883426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.