| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4162839 | 52 (1.260) | 3 (0.080) | 3/250 | NT | 5.8% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase |
| ? | NC_000913 | = 4162849 | 49 (1.250) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase | |||||
CTGGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGG > NC_000913/4162701‑4162976 | cTGGGTAAAGCTGTTTTCTACCTGACGGTACAGCATCTCTTTCTCGTGGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCa < 1:726703/143‑1 (MQ=255) tggatatcTGTTTACTGCCTGACGGTAGCTCAGCTCTTTCCCTGCGCCCGGCACACGTTCATCGATGTAATCCTGATCCATCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTg < 2:736880/136‑1 (MQ=255) gTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATACTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTTCGCGCGCAggtc > 1:394418/1‑140 (MQ=255) agaGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTACTCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCAt < 2:709988/141‑1 (MQ=255) gTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGAATTCTTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGatgcactgcgcgcgca < 1:773866‑M1/143‑17 (MQ=255) ttttCTACCTGCCGGTAGATCATCTCTTTCCCTGCGACCGGCACCCGTTCTTCGATGTAATCTTTATCCTGCTCGATTTTGCTTTTCGTTTCCCGACCAATCATATGCACATTCAGATTCTGCGCGCGCAGTGCATcgcgcag > 1:303211‑M2/1‑136 (MQ=255) tCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATGGCGCAGGGc > 1:28967/1‑143 (MQ=255) gacgtGAAGGGAGATCGTCGCTTGGGCTGCGACCGGCAGAGGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGGTTTCGTTGGCCGAACAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCt < 1:364897/139‑1 (MQ=255) aCCGGACGGTACATCCTCGCTGTCCCTGCGACTGCCAGACGTTCATCGCTGTAATCCTGATCCAGCTCGAGTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATCCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTc < 2:221041/143‑1 (MQ=255) ccgTAGCTCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATCCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTc < 2:468525/141‑1 (MQ=255) tAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTg > 1:41529/1‑143 (MQ=255) gttcatcTCTTTCCCTGCGACCGGCCGCCGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGAc < 2:626533/141‑1 (MQ=255) catcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGcc > 2:448684/1‑143 (MQ=255) atcTCTTTCCCTGCGACCGGAAGACGATAATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGCTGCACATTCAGATTCTGAGCGAGCCGTACAACGCGCAGAGCCGCCGCTACCTGAccggg > 2:402278/1‑139 (MQ=255) tctTTCCCTGCGACCGGCAGACGGTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGCCCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGgcgcgccgc > 1:309626/1‑138 (MQ=255) ctTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtca < 1:500038/143‑1 (MQ=255) tttCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcat < 1:238686/143‑1 (MQ=255) ccTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATCTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCatcatc < 1:52626/143‑1 (MQ=255) ccTGCGACCGGCAGACGTTCAGCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCatcatc < 1:59698/143‑1 (MQ=255) cTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATcc > 2:198666/1‑143 (MQ=255) ccGGCATACGTTCCTCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCGCGACCAATCCGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGTGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttc < 2:596522/143‑1 (MQ=255) ggCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCCTCATCCAGcttctt > 2:728683/1‑143 (MQ=255) ggCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttctt < 2:332748/143‑1 (MQ=255) gCAGACGTTCATCGATGTAATCCTGATCCAGCTAGATTTTGGGTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATcgcgcagaatctgaatgtgcatctgattggtcgggcaacgaaaaccc < 1:559586‑M2/143‑48 (MQ=255) aGACTTTCATCGATGTACTCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATcgcgcagaatctgaatgtgcatctgattggtcgggcaacgaaaaccaaa > 2:559586‑M2/1‑94 (MQ=255) gACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTGTTCGTTGCCCGACCAATCCGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATgg < 2:129633/143‑1 (MQ=255) aCGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACCTTCAGATTCTGCGCGCGCAGTGCATCGCGCAAGGCCTCCGCATCATGACGACACTCATCATCCAGCTTCTTATgag > 1:627086/1‑141 (MQ=255) ggtCATCGATGTAATCCTGATCCGGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGtat < 2:6090/141‑1 (MQ=255) cGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAgg > 2:363740/1‑143 (MQ=255) aTCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCATGACGACACTGAACATCCAGCTTCTTATGGTATTGCAGGGAAacca > 1:770350/1‑143 (MQ=255) tCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAaccac < 1:604761/143‑1 (MQ=255) cTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCg > 2:782005/1‑143 (MQ=255) cTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACGCATCATCCAGCTGCTTATGGTATAGCAGGGCAacacccg > 1:541693/1‑138 (MQ=255) gATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGcc > 2:553986/1‑143 (MQ=255) tCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCCTATGGTATAGCAGGGAACCCACCCCCTg > 2:115230/1‑143 (MQ=255) ccAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGa > 2:541802/1‑143 (MQ=255) cAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGCAAACCACCGCCTgct > 1:739468/1‑141 (MQ=255) gcttttGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGCTTCTGCGCGCGCAGTCCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCa < 2:231403/141‑1 (MQ=255) tttGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGatgcactgcgcgcgcagaatctgaatgtgcatctgattggtcgggcaacgaaaaccaaaatcgagctggatcaggagtacatcgatgaaagtct > 2:559586‑M1/1‑49 (MQ=255) ttGGTTTTCGTTGCCCGACCAATCAGATGCAAATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTGATCATCCAGCTTCTTATGGTATAGCAGGGGAACCACCGCCTGATTCCTCaacgt > 2:172618/1‑139 (MQ=255) gggtTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGatgcactgcgcgcgcagaatctgaatgtgcatctgattggtcgggcaacgaaacccaaaatctagctggatcaggattacatcgatgaacgtctgc < 1:559586‑M1/142‑97 (MQ=255) ttttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCCGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTg > 1:611437/1‑143 (MQ=255) tttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGa < 1:439603/143‑1 (MQ=255) tCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAgg < 1:373168/143‑1 (MQ=255) gTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTa > 1:554604/1‑143 (MQ=255) ccGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCCGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGGaatcga > 1:567489/1‑141 (MQ=255) ccGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTaatcaa > 1:341447/1‑143 (MQ=255) ccGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTaatcaa > 2:613864/1‑143 (MQ=255) cGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGACACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTaatcaat < 1:294463/143‑1 (MQ=255) cAATCGGATGCACATTCAGATTCTGCGCGCGCCGTGCATCGCGCAGGGCCTACGCTTCCGGGCGCCACTCAGCGTCCAGCCTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGGGTAGTGAGGTAATCAATCTgg < 2:612524/143‑1 (MQ=255) cAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGaaca > 2:740329/1‑143 (MQ=255) aTGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTACTCAATCTGGAACAACt > 1:162936/1‑143 (MQ=255) aTGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACt < 1:728683/143‑1 (MQ=255) acaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTtgtg < 1:198666/143‑1 (MQ=255) cagtccgATTCCGCGCGCGCAGTGCATCGCGCCGGCCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTgg < 1:27218/137‑1 (MQ=255) ttCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGgcg < 1:793618/143‑1 (MQ=255) tCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTCATCACTCTGGAACAACTTGTGgcgc > 2:679889/1‑143 (MQ=255) tCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTAATTACTCAGTGTAGTGAGGTAATCAACCTGGAACCACTTGTGacgc > 2:481353/1‑143 (MQ=255) aGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACCCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTCCTCAGCGAAGGGAGGTAATCAAGCTGGAACAACTAGTGGCCCAg > 2:469616/1‑143 (MQ=255) tCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACg > 1:698430/1‑143 (MQ=255) cTGCGCGatgcactgcgcgcgcagaatctgaatgtgcatatgattggtcgggaaacgaaaagcaaaatcgagcaggataaagattacatcgaagaacgggtgccggtcgcagggaaagagatgatctaccggcaggtagaaaa > 1:303211‑M1/1‑7 (MQ=255) tGCGCGCGCAGTGCATcgcgcagaatctgaatgtgcatctgattggtcgggcaaagaattccaaaatcgagctggatcaggattacatcgatgaacgtctgccggtcgcagggaaagagatgatctaccgtcaggtagaaaac < 1:773866‑M2/143‑128 (MQ=255) | CTGGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGG > NC_000913/4162701‑4162976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |