New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4296067	NA (NA)	3 (0.080)	3/250	NT	NA	noncoding (6/37 nt)	other	REP321e
	?	NC_000913	= 4296086	NA (NA)					noncoding (25/37 nt)	other	REP321e

TATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTA  >  NC_000913/4295927‑4296209                                                                                                                                             |                                                                                                                                               tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc                                                                                                                                              >  1:333667/1‑143 (MQ=17)  aTGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCg                                                                                                                                             >  1:761269/1‑143 (MQ=32)   tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCCGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGGCGTATAAGGCGTTTACGCCGCATCCGAGATCAAGGCCGGATGCgg                                                                                                                                            >  1:131672/1‑142 (MQ=11)   tGCCCCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa                                                                                                                                            <  1:360311/143‑1 (MQ=17)   agCCGCACCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGATAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa                                                                                                                                            <  1:407935/142‑1 (MQ=17)     ccGCATCCGACATCAACGCCTGATGCGACGCTTAACCCGTGTTATCAGGCCTACGCACGACAGCCCAGTAGCCTGATTTGGCGTGAGTTTGTAGGACGGCTGAGGCGTTTACGCCGCCTCCCACACAAACGCCTGATACgcag                                                                                                                                          >  1:528142/1‑140 (MQ=11)            cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATCCGACGCTTGCcg                                                                                                                                   >  2:534154/1‑143 (MQ=25)             gACATCAACGCCTGATGCGACGCTTACCGCGTCTGAGCATGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc                                                                                                                                  <  2:790189/143‑1 (MQ=255)             gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCGGATGCGACGCCTGCcgc                                                                                                                                  >  2:158192/1‑143 (MQ=25)             gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGACTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATACCAAATGCAACGCTcgccgc                                                                                                                                  >  1:197147/1‑143 (MQ=11)                aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATCGCCGGATTCAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACGTCAACGCCCGATGCGCCGCTCGCCGCCTc                                                                                                                               >  2:118076/1‑143 (MQ=11)                 tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                                                                                    <  2:34012/137‑1 (MQ=25)                 tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc                                                                                                                                    >  1:34012/1‑137 (MQ=35)                 tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAACGTCATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCCACATCAATACCCGATGCGACCCTTGCAGCGTcc                                                                                                                              >  2:233470/1‑142 (MQ=11)                   aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa                                                                                                                            <  1:662228‑M2/143‑2 (MQ=255)                    aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCGGCGGCTTat                                                                                                                           <  1:789543‑M2/143‑3 (MQ=255)                      gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTatca                                                                                                                         >  2:761269‑M2/1‑139 (MQ=255)                      gCCTGATAAGACGCGTTAAGCGTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTACCGCCTCTATGCCGCATCCGCCATCCAGGCCTGCTGCGACGCCTGCCGCGTCTTCTCa                                                                                                                         >  1:809333/1‑143 (MQ=2)                       ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGCCTTatccg                                                                                                                        <  1:30801‑M2/143‑6 (MQ=255)                           aTGTGACGTTTAAGGCGTCTTATAAGGCATATGTTATTTTGCGCAATAGCTTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATaagacgcggcaagcgtcgcatcaggcgt                                                                                                                    <  1:69641‑M1/143‑29 (MQ=255)                            tGCGACGCTTAACGCGTCTTATCATTCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTACCAGGCCtg                                                                                                                   >  2:715936/1‑142 (MQ=255)                            tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                                   <  1:164401/143‑1 (MQ=25)                              cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAGCGCCTGATGCGACGCTTGCAGAGTCTTGTCAGGCCTCCg                                                                                                                 >  1:504537/1‑143 (MQ=14)                              cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatc                                                                                                                 >  2:343234/1‑141 (MQ=17)                               gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATaagacgcggcaagcgtcgcatcaggcgttga                                                                                                                 <  2:87530‑M1/142‑32 (MQ=255)                               gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATaagacgcggcaagcgtcgcatcaggcgttga                                                                                                                 >  1:87530‑M1/1‑111 (MQ=255)                               gACGCTGAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAACCGCCATCACTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatct                                                                                                                <  1:570097/143‑4 (MQ=11)                                      caagcgTCTCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGCCATCAACGCCTGCTGCGACGCTGGCCGCGCCTTATCCGGGCTACGCCCGAccg                                                                                                         >  1:253579/4‑141 (MQ=11)                                      aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCccagccag                                                                                                         >  1:176615/1‑143 (MQ=255)                                       aCGCGTCTTATCAGGCGGAGGCAAGACAGGGCAATAGCCTGATTTAGTGTGATTTTGTGGGTCGGATAAGGGGTTTACGCCGCATCCGACGTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc                                                                                                        <  2:226821/143‑1 (MQ=14)                                        cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGTCGCCTCGTATCAGGCCTACCCCACACAacg                                                                                                       >  2:164401/1‑143 (MQ=11)                                         gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTTGGTTGGATAAGGTGTGTACGCCGCATCCGAAATCAACGCCTGATGCGACGCTGGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc                                                                                                      <  1:496575/143‑1 (MQ=11)                                          cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCa                                                                                                     >  1:682376/1‑143 (MQ=38)                                               tATCAGGGCTACGCCAGGCGGCGCAATGGCCTGATTGCGCGTGATTTTGTGGGTCGTATAAGGCGTTTCCGCCGCATCCGGCGTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc                                                                                                <  2:797507/143‑1 (MQ=14)                                                  cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg                                                                                             <  1:558575/143‑1 (MQ=37)                                                     gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg                                                                                                                                      <  2:63792/99‑1 (MQ=25)                                                             cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc                                                                                                                                     <  1:190137/92‑1 (MQ=255)                                                             cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc                                                                                                                                     >  2:190137/1‑92 (MQ=255)                                                                aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt                                                                                                                              >  2:489439/1‑96 (MQ=255)                                                                aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt                                                                                                                              <  1:489439/96‑1 (MQ=255)                                                                 cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGACAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                              <  1:534888/143‑1 (MQ=38)                                                                                       gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg                                                                                                       >  1:741926/1‑96 (MQ=255)                                                                                           ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTCTCGTGATCCTCTAGGTCGGATATGGCGTTTAAGCCg                                                    >  2:602768/1‑143 (MQ=14)                                                                                               gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt                                                                                                                              <  2:562430/65‑1 (MQ=255)                                                                                               gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt                                                                                                                              >  1:562430/1‑65 (MQ=255)                                                                                                  ggTCGGATAAGGCGTTTATGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt                                                                                                                                >  2:217553/1‑60 (MQ=11)                                                                                                  ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt                                                                                                                                <  1:217553/60‑1 (MQ=255)                                                                                                       gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGACTTTGTAGGTCGGACCAGCCGTTTCTGCCGCATCCGACCTcc                                        >  1:26488/1‑142 (MQ=14)                                                                                                                tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTATTCATTGCTTTAGCCTGATTTCGCGTGATTTCGTATGTCGGATAAGGCGTTTCTGCCGCTGCCGACCTCGTCGCCTgct                               >  2:641934/1‑141 (MQ=9)                                                                                                                      ccgcATCCGACATGAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg                         <  1:654416/143‑1 (MQ=25)                                                                                                                        gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCAt                                                 >  2:642821/1‑117 (MQ=38)                                                                                                                        gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCAt                                                 <  1:642821/117‑1 (MQ=37)                                                                                                                            ccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc                   <  1:532218/143‑1 (MQ=34)                                                                                                                              gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgc                 >  2:252728/1‑143 (MQ=35)                                                                                                                                caccagcGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt               <  1:803056/137‑1 (MQ=11)                                                                                                                                  tCAACGCCTGATGCGACGCTTGCCGCGTCTTatcaggcgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtc              >  1:87530‑M2/1‑31 (MQ=255)                                                                                                                                  tCAACGCCTGATGCGACGCTTGCCGCGTCTTatcaggcgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtc              <  2:87530‑M2/142‑112 (MQ=255)                                                                                                                                     aCGCCTGATGCGACGCTTGCCGCGTCTTatcaggcgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaagctattgcgcaaaataacatatgccttataagacgccttaaacgtcacat          <  1:69641‑M2/143‑116 (MQ=255)                                                                                                                                         cggataaggcgcggcaagcgtcgcatcaggcattgatgtcggatgcggcgtgaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtcgcatcagg      <  1:30801‑M1/141‑139 (MQ=255)                                                                                                                                          tGATaagacgcggcaagcgtcgcatcaggcattgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtcgcatcaggc     >  2:761269‑M1/1‑4 (MQ=255)                                                                                                                                            aTaagccgccgcaagcgtcgcatcaggcattgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtcgcatcaggcgt   <  1:789543‑M1/143‑142 (MQ=255)                                                                                                                                             taagacgcggcaagcgtcgcatcaggcattgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtcgcatcaggcgtt  <  1:662228‑M1/143‑143 (MQ=255)                                                                                                                                             |                                                                                                                                               TATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTA  >  NC_000913/4295927‑4296209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.