New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4296067	NA (NA)	3 (0.080)	3/250	NT	NA	noncoding (6/37 nt)	other	REP321e
	?	NC_000913	= 4296086	NA (NA)					noncoding (25/37 nt)	other	REP321e

AACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAT  >  NC_000913/4295945‑4296201                                                                                                                                              |                                                                                                                    aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa                                                                                                                    <  1:662228‑M2/143‑2 (MQ=255)  aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCGGCGGCTTat                                                                                                                   <  1:789543‑M2/143‑3 (MQ=255)    gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTatca                                                                                                                 >  2:761269‑M2/1‑139 (MQ=255)    gCCTGATAAGACGCGTTAAGCGTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTACCGCCTCTATGCCGCATCCGCCATCCAGGCCTGCTGCGACGCCTGCCGCGTCTTCTCa                                                                                                                 >  1:809333/1‑143 (MQ=2)     ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGCCTTatccg                                                                                                                <  1:30801‑M2/143‑6 (MQ=255)          tGCGACGCTTAACGCGTCTTATCATTCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTACCAGGCCtg                                                                                                           >  2:715936/1‑142 (MQ=255)          tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                           <  1:164401/143‑1 (MQ=25)            cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAGCGCCTGATGCGACGCTTGCAGAGTCTTGTCAGGCCTCCg                                                                                                         >  1:504537/1‑143 (MQ=14)            cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatc                                                                                                         >  2:343234/1‑141 (MQ=17)             gACGCTGAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAACCGCCATCACTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatct                                                                                                        <  1:570097/143‑4 (MQ=11)                    caagcgTCTCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGCCATCAACGCCTGCTGCGACGCTGGCCGCGCCTTATCCGGGCTACGCCCGAccg                                                                                                 >  1:253579/4‑141 (MQ=11)                    aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCccagccag                                                                                                 >  1:176615/1‑143 (MQ=255)                     aCGCGTCTTATCAGGCGGAGGCAAGACAGGGCAATAGCCTGATTTAGTGTGATTTTGTGGGTCGGATAAGGGGTTTACGCCGCATCCGACGTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc                                                                                                <  2:226821/143‑1 (MQ=14)                      cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGTCGCCTCGTATCAGGCCTACCCCACACAacg                                                                                               >  2:164401/1‑143 (MQ=11)                       gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTTGGTTGGATAAGGTGTGTACGCCGCATCCGAAATCAACGCCTGATGCGACGCTGGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc                                                                                              <  1:496575/143‑1 (MQ=11)                        cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCa                                                                                             >  1:682376/1‑143 (MQ=38)                             tATCAGGGCTACGCCAGGCGGCGCAATGGCCTGATTGCGCGTGATTTTGTGGGTCGTATAAGGCGTTTCCGCCGCATCCGGCGTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc                                                                                        <  2:797507/143‑1 (MQ=14)                                cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg                                                                                     <  1:558575/143‑1 (MQ=37)                                               cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGACAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                      <  1:534888/143‑1 (MQ=38)                                                                     gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg                                                                                               >  1:741926/1‑96 (MQ=255)                                                                         ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTCTCGTGATCCTCTAGGTCGGATATGGCGTTTAAGCCg                                            >  2:602768/1‑143 (MQ=14)                                                                                     gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGACTTTGTAGGTCGGACCAGCCGTTTCTGCCGCATCCGACCTcc                                >  1:26488/1‑142 (MQ=14)                                                                                              tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTATTCATTGCTTTAGCCTGATTTCGCGTGATTTCGTATGTCGGATAAGGCGTTTCTGCCGCTGCCGACCTCGTCGCCTgct                       >  2:641934/1‑141 (MQ=9)                                                                                                    ccgcATCCGACATGAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg                 <  1:654416/143‑1 (MQ=25)                                                                                                      gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCAt                                         >  2:642821/1‑117 (MQ=38)                                                                                                      gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCAt                                         <  1:642821/117‑1 (MQ=37)                                                                                                          ccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc           <  1:532218/143‑1 (MQ=34)                                                                                                            gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgc         >  2:252728/1‑143 (MQ=35)                                                                                                              caccagcGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt       <  1:803056/137‑1 (MQ=11)                                                                                                                tCAACGCCTGATGCGACGCTTGCCGCGTCTTatcaggcgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtc      >  1:87530‑M2/1‑31 (MQ=255)                                                                                                                tCAACGCCTGATGCGACGCTTGCCGCGTCTTatcaggcgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtc      <  2:87530‑M2/142‑112 (MQ=255)                                                                                                                   aCGCCTGATGCGACGCTTGCCGCGTCTTatcaggcgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaagctattgcgcaaaataacatatgccttataagacgccttaaacgtcacat  <  1:69641‑M2/143‑116 (MQ=255)                                                                                                                                              |                                                                                                                    AACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAT  >  NC_000913/4295945‑4296201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.