| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 566841 | 19 (0.460) | 14 (0.450) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA |
9/212 | 2.1 | 45.7% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 25 (0.610) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
GCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAAC > NC_000913/566699‑566977 | gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTGAGTGAGTAAACTCTCAGTCAGAGGTGACTcac > 1:217937/1‑143 (MQ=255) tACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa < 1:384691/143‑1 (MQ=255) aCCGGGGGACGCATAAGAGCTTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 2:528979/143‑1 (MQ=255) tGGGTACGGATAAGTGCTCCTGTCCACAGGACGTTGCCGCGGCAACAGGCGCAACCGTAATCTGATCCTCCCCATCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt < 1:618567/143‑1 (MQ=18) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAGCAACCAGTa > 2:360040/1‑143 (MQ=255) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa > 1:606967/1‑143 (MQ=255) ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc > 2:182614/1‑143 (MQ=255) cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCg > 2:715113/1‑143 (MQ=255) tgtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCCATAGTGGACACGCGGCTCAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAACAGTAGAAAACCCCgg > 2:89381/1‑142 (MQ=255) tgtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATGAACCAGTAAAAAAACCCGt > 2:312608/1‑143 (MQ=255) tgtgCACAGGACGTTGCCGCGGTAACAGACGCAACCGTAATCTGCTCTTACCCAGCAATAGTGGACACGCGCCTAAGTGAGTAAACTCTCCTTCAGAGGGCACTGACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGt > 2:478143/1‑143 (MQ=18) gCACAGGACGGTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 1:19394/143‑1 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCAAACGCTCCGTCACAGGTGACTCACATGCAAAGAACAGTATCAACCAGCAAAAAACCCCGTAAACa > 2:172376/1‑143 (MQ=17) gccgccTTAACAGGCGCAAGCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTACACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt < 2:80203/143‑1 (MQ=255) ccGCGGTAACAGGCGCAACCGGAATCTGATCTCACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTg < 2:353182/143‑1 (MQ=255) cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa > 1:648759/1‑143 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg > 1:131438/1‑143 (MQ=35) gcgcAACCGTAAACTAATCTTACGCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg < 1:716920/143‑1 (MQ=255) cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAg > 1:654273/1‑143 (MQ=33) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc > 1:186986/1‑143 (MQ=32) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactgttgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgac > 1:396801‑M1/1‑37 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtcagacaagttcacgcttcccctccgcagaggtcaaccgctagatgaaaagaattgcaggtccagttcttcatctgtgaa > 2:620765‑M1/1‑37 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagcggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaa > 1:239693‑M1/1‑37 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacactagatgcaaagaattgcaagtgcatttctgcatctgtgaa > 2:479745‑M1/1‑37 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaag > 1:335592‑M1/1‑36 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaag > 2:60154‑M1/1‑36 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactagtgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagctgcaaagaattccccgtccatttctgcacctgtgaagg > 2:257061‑M1/1‑35 (MQ=255) aGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtgagatcagttcacgcttcccctccgcagaggtcgaacgctcgatgcaaggacttgcaggtgcatgtctgcatctgcgaagggag > 2:438425‑M1/1‑32 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttccaacaccaggtggtgtaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaa > 1:759824‑M1/1‑30 (MQ=255) ggcgggatgacgcacttagccgcgtgtccactattgctgggtaagatcagtgcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgt < 1:351202‑M1/136‑129 (MQ=255) gagaggTCACTCACttagcggcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgta < 2:697470‑M1/142‑130 (MQ=255) ttgACTCACttagccgcgtgtctgctcttcagttgaaatatcagttcacacttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaaggtagaagagagtttggattgtatgtgc < 2:7509‑M1/142‑135 (MQ=255) gTGACTCACttagccgcgcgtccactattgcggggtaagagcagttcacgcttcgcctccgcagagggcaaacgctagatgcaaagaattgcaggtgcatttctgcctgttggaagtgagaagagagttttgattgtatgtgc < 2:546915‑M1/143‑135 (MQ=255) gACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcgc < 1:435330‑M1/143‑137 (MQ=255) | GCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAAC > NC_000913/566699‑566977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |