BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 566841	19 (0.460)	14 (0.450) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA	9/212	2.1	45.7%	noncoding (65/1258 nt)	IS3	repeat region
*	?	NC_000913	= 572471	25 (0.610)	14 (0.450) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA	9/212	2.1	45.7%	coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

Only 100 of 3289 total aligned reads displayed.

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCAC  >  NC_000913/572329‑572613

gAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC                                                                                                                                                >  2:762384‑M2/1‑143 (MQ=255)

 gtcaactcCGGCGACTTCTGCGCTAAACTGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt                                                                                                                                               >  2:385742‑M2/3‑142 (MQ=255)

   caacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTAGG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtga                                                                                                                                             >  1:24824‑M2/1‑140 (MQ=255)

    cactCCCGTGACTTCTGCCCTAAACGGGGACGTTTATG‑CGCACATACACTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCTCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGCGGGGAAGCGTGAACtgat                                                                                                                                            >  1:290528‑M2/2‑139 (MQ=255)

    agcgccggtgACTTCTGCGCTACACGGGGACGTTTATG‑CGCACATACAATCCAGTCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  2:397974‑M2/5‑139 (MQ=255)

    accTCCGGTGACCTGTGCGCTACACGGGGAAG‑AAATGATGCTGATACTATCCACACTCTCTGCTCCCTTCACAGATGCAGAAATGCACCTGCGATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAActgat                                                                                                                                            <  2:157852/141‑5 (MQ=255)

    aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  1:654980‑M2/1‑139 (MQ=255)

    aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  1:669332‑M2/1‑139 (MQ=255)

    aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  1:202762‑M2/1‑139 (MQ=255)

     acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                                                                           >  1:1658‑M2/1‑138 (MQ=255)

       tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGCAATGCAACTGCAATTCTTTGCCTCTATCGTTCGACCACCGCACAGGCGACGCGTGAACtgctcca                                                                                                                                         <  2:282119‑M2/143‑8 (MQ=255)

       tCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCAGCTAGCGTTTGACCTCTGCGGAGGGGACGCGTGGACtgatctt                                                                                                                                         <  1:222968‑M2/143‑8 (MQ=255)

         cGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCAGATACAATCCACACCCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTGTGCATCTAGCGTTTGACCTCTGCGGACGGGCACCGTGCACtgcccctac                                                                                                                                       <  2:581056‑M2/143‑10 (MQ=255)

         cGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttac                                                                                                                                       <  1:578394‑M2/143‑10 (MQ=255)

         cGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTATTCTCCCTTCACAGATGAAGAAATGCAACTGCAATTCTTTGCATCTAGCGTTTGACGCCTGCGGAGGGGAAGCGTGAACtgatcttgc                                                                                                                                       <  1:123787‑M2/143‑10 (MQ=255)

                ttCTGCGCTCAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaa                                                                                                                                >  1:301979‑M2/1‑127 (MQ=255)

                ttCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaa                                                                                                                                <  1:485926‑M2/143‑17 (MQ=255)

                ttCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTCGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccggcaa                                                                                                                                <  2:47384‑M2/143‑17 (MQ=255)

                      gcTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgg                                                                                                                          <  1:628473‑M2/143‑23 (MQ=255)

                            cGGGGTCGTTTATG‑CGCACATACAATCCAAACTCGCTACTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgc                                                                                                                    >  1:183067‑M2/1‑115 (MQ=255)

                            cGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccccgcaatagtggacacgc                                                                                                                    <  2:174296‑M2/143‑29 (MQ=255)

                                gACGTTTATG‑CGCACATACAATCCAAACTCTCTTGGCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGGGTGAACtgatctcaccccgcaatagaggaccagcggca                                                                                                                <  2:691079‑M2/143‑33 (MQ=255)

                                 aCGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGAAATTCTTGGCGTCTAGCGTTTGACCTCTGCGGGGGGGAAGCGTGAACgggtcttacccagcaatagtggacacgcggcta                                                                                                               <  1:233648‑M2/143‑34 (MQ=255)

                                  cGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaa                                                                                                              >  1:542879‑M2/1‑109 (MQ=255)

                                   gTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacgcgcggctaag                                                                                                             <  1:100175‑M2/143‑36 (MQ=255)

                                   gTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCATGAGGtggttttcccctgcaatagtggacacgcggctaag                                                                                                             <  1:517003‑M2/143‑36 (MQ=255)

                                   gTTTATG‑CGCACATACAAGCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaag                                                                                                             >  1:530762‑M2/1‑108 (MQ=255)

                                    tttATG‑CGGACATACAATCCAAGCTCTCTTCTCCCTTCACAGAGGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagt                                                                                                            >  2:187551‑M2/1‑107 (MQ=255)

                                     ttATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                                                                           >  1:93801‑M2/1‑106 (MQ=255)

                                         g‑cgcACATACAATCCCAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagta                                                                                                       >  2:109972‑M2/1‑102 (MQ=255)

                                         g‑cgcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcactagtggacacgcagctagctgagta                                                                                                       <  1:135036‑M2/143‑42 (MQ=255)

                                           cgcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                                                                                                      <  2:312015‑M2/143‑43 (MQ=255)

                                            gcACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTATGCTTCTCATAATCATGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa                                                                                                     <  1:557484‑M2/143‑44 (MQ=255)

                                              acaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact                                                                                                   >  1:46456‑M2/1‑98 (MQ=255)

                                                  aCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca                                                                                               >  1:696129‑M2/1‑94 (MQ=255)

                                                  aCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATCCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGAAGCGGCAGCGTGAACtgatcttacccagcaatagtggccacgcggctacatgagtacactccac                                                                                               <  2:649204‑M2/143‑50 (MQ=255)

                                                  aCAATCCAAACTCCCTTCTCCTTTCACAGATGCAGACATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCGCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca                                                                                               >  2:326550‑M2/1‑94 (MQ=255)

                                                    aaTCCAAACTCTCTTCTCCCTTCACAGATGCAGCAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt                                                                                             >  2:532791‑M2/1‑92 (MQ=255)

                                                    aaGCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt                                                                                             >  1:619318‑M2/1‑92 (MQ=255)

                                                     aTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc                                                                                            <  1:718926‑M2/143‑53 (MQ=255)

                                                      tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCACTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacaagcggctaagtgagtaacctctcagtaa                                                                                           <  2:373293‑M2/143‑54 (MQ=255)

                                                      tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaattgagtaaactctcagtta                                                                                           <  1:262331‑M2/143‑54 (MQ=255)

                                                      tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca                                                                                           <  1:475304‑M2/143‑54 (MQ=255)

                                                        cAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCGATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatcgtggacacgcggctaagtgagtaaactctcagtcaga                                                                                         >  2:34434‑M2/1‑88 (MQ=255)

                                                        cAAACGCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga                                                                                         >  1:114381‑M2/1‑88 (MQ=255)

                                                         aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGCGAAGCGTGAACtgatcttacccagcaatagtggacacgcgcctaagtgagtaaactctcagtcagag                                                                                        <  2:461153‑M2/143‑57 (MQ=255)

                                                                 ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttccccagcaatagtggacacgcggctaagtgagtaacctctcagtcagaggtgccgca                                                                                <  2:265887‑M2/143‑65 (MQ=255)

                                                                 ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca                                                                                <  1:80629‑M2/143‑65 (MQ=255)

                                                                 tgctcccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca                                                                                >  1:569340‑M2/3‑79 (MQ=255)

                                                                   ctcCGTTCACAGGTGCAGAAATGCGCCTGGTATTCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca                                                                              >  2:622450‑M2/1‑77 (MQ=255)

                                                                    tcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttccccagcaatagtggacacgcggctaagtgagtaaactctcagtcggaggtggctcacat                                                                             <  1:743159‑M2/143‑68 (MQ=255)

                                                                        ttCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAAGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctacgtgagtaaactctcagtcagaggtgcctcacatgacc                                                                         <  1:190932‑M2/143‑72 (MQ=255)

                                                                           acaGATGCAGAAATGCACCTGCAACTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaa                                                                      >  1:154509‑M2/1‑69 (MQ=255)

                                                                             aGATGCAGAAATGCACCTGAAATTCTTTGAATATAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatattacccagcaatagtggacacgccgctaagtaagtaaactcccagacagaggcagcccacatgacacaaaa                                                                    <  2:679025‑M2/143‑77 (MQ=255)

                                                                              gATGCAGCAATGCACCCGCAATTCGTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                                                                   >  2:593819‑M2/1‑66 (MQ=255)

                                                                              gACGCAGTAATGCACCTGCGATTCTTGGCATCTAGCGTTTGACCTCGGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                                                                   >  2:205699‑M2/1‑66 (MQ=255)

                                                                                   aGAAATGCACCTGCGATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                              >  2:357024‑M2/1‑61 (MQ=255)

                                                                                   aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGCAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggggagccacatgacaaagacagtata                                                              <  2:431924‑M2/143‑83 (MQ=255)

                                                                                   aGAAATGCACCTGCAATTCTTTGCATCTAGCGCTTGCCCTCTTCATAAGGGAAGCTTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                              <  1:145771‑M2/143‑83 (MQ=255)

                                                                                      catGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaac                                                           >  2:443558‑M2/2‑58 (MQ=255)

                                                                                      aaTGCGCCTGCAATTCTTGGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaac                                                           >  2:724769‑M2/1‑58 (MQ=255)

                                                                                      aaTGCCCCGGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagttgacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaac                                                           >  2:706213‑M2/1‑58 (MQ=255)

                                                                                      aaTGCACCTGCAATTCTTTGCATCCAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaac                                                           >  1:709271‑M2/1‑58 (MQ=255)

                                                                                         gCACCTGCAAGTCTTTGCATCTATCGTTTGACCTCTGCGGAGGGGAAGCGTCAACtgattgtacccagcaacagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccag                                                        >  2:662151‑M2/1‑55 (MQ=255)

                                                                                              tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa                                                   <  2:413171‑M2/143‑94 (MQ=255)

                                                                                              tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcaggcagaggtgactcacatgaaaaaaacagtatcaaccagtaaga                                                   <  1:450918‑M2/143‑94 (MQ=255)

                                                                                              tGCAATTCTTTGCATCTAGCGTTTGACCTCAGCAGAGGGGAAGCATGAACtcatcatacccagcaatagtggacacgcggctaagtgagtaaactctcagtaagaggtgacacaaaagacaaaaacagaagcaacaagtaaaa                                                   <  2:83752‑M2/143‑94 (MQ=255)

                                                                                               gCAATACTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaa                                                  >  2:501332‑M2/1‑49 (MQ=255)

                                                                                                cgcgtctttGCATCGAGCGTTTGAGCTCTGCGGAGGGGAAGCGTGAACtgatcttaccaagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaa                                                 >  2:605693‑M2/5‑48 (MQ=255)

                                                                                                cAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaa                                                 <  1:399113‑M2/143‑96 (MQ=255)

                                                                                                cAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggcgaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaa                                                 >  2:126480‑M2/1‑48 (MQ=255)

                                                                                                  aTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGACGCGTCAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtaacccacctgacaaaaccagtatcaaccagtaaaacacc                                               <  2:516861‑M2/143‑98 (MQ=255)

                                                                                                    tCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacccc                                             >  1:373333‑M2/1‑44 (MQ=255)

                                                                                                    tCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacccc                                             >  1:385579‑M2/1‑44 (MQ=255)

                                                                                                     cTTTACATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccg                                            >  2:250024‑M2/1‑43 (MQ=255)

                                                                                                         gCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaa                                        >  1:422951‑M2/1‑39 (MQ=255)

                                                                                                         gCATCGAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaacccccgtaaa                                        >  1:344207‑M2/1‑39 (MQ=255)

                                                                                                           aTCTAGCGTTTGACCTCTGCGGAGGGGCAGCGTGAACtgagcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaaca                                      >  1:318286‑M2/1‑37 (MQ=255)

                                                                                                           aTCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaccaaaacagtatcaaccagtacaaaaacccgtaaaca                                      <  1:606045‑M2/143‑107 (MQ=255)

                                                                                                               aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacaccgtaaacagcat                                  <  1:4372‑M2/143‑111 (MQ=255)

                                                                                                                 cGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaagaaccccgtaaagagcattc                                <  1:35965‑M2/143‑113 (MQ=255)

                                                                                                                  gTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcg                               <  1:501341‑M2/143‑114 (MQ=255)

                                                                                                                   tttGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgc                              <  1:275600‑M2/143‑115 (MQ=255)

                                                                                                                   tttGACCTCTGCGGAGGCGAAGCGTGAACggatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgc                              >  2:554292‑M2/1‑29 (MQ=255)

                                                                                                                    ttGACCTCTGCGGAGGTGAAGCGTGAACtgatcttacccagcacgagttgacacgccgctaagtgagtaaactctcagtcagaggtgactcacatgacaaatacagtagcaaccaggaataaaccccgtaaacagcattcgcc                             >  2:235248‑M2/1‑28 (MQ=255)

                                                                                                                      gACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgg                                                                                                                          >  2:222729‑M2/1‑26 (MQ=255)

                                                                                                                       aCCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatcgtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtcaaaaaccccctaaacaccactcgcctga                          <  2:747808‑M2/143‑119 (MQ=255)

                                                                                                                       aCCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagccttcgcctga                          <  2:637553‑M2/143‑119 (MQ=255)

                                                                                                                         ctctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                              <  1:332408‑M2/105‑83 (MQ=255)

                                                                                                                              cGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgactttcgc                   <  1:590137‑M2/143‑126 (MQ=255)

                                                                                                                               ggAGGGGAAGCGCGAACtgatatttcccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgca                  >  2:570319‑M2/1‑17 (MQ=255)

                                                                                                                                 aGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgactttcgcagt                <  1:642256‑M2/143‑129 (MQ=255)

                                                                                                                                  ggggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtg               >  2:48656‑M2/1‑14 (MQ=255)

                                                                                                                                   gggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtga              <  1:731259‑M2/143‑131 (MQ=255)

                                                                                                                                    ggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtcaactctcagtcagaggtgactcacatgacaaaaacagtctcaaccagtaaaaaaccccgtaaacagcattcgccggaatttcgcagtgac             <  2:29549‑M2/143‑132 (MQ=255)

                                                                                                                                       aGCGTGAACtgatcttacccagcaataggggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaactccgtaaacagcattcgcctgaatttcgcagtgaagcc          >  1:680306‑M2/1‑9 (MQ=255)

                                                                                                                                        gCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaaacctatccaagaggctagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccc         <  1:759263‑M2/143‑136 (MQ=255)

                                                                                                                                         cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccct        >  1:412509‑M2/1‑7 (MQ=255)

                                                                                                                                         cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat                                                                             <  2:144315‑M2/74‑68 (MQ=255)

                                                                                                                                            gAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctgaa     >  1:214273‑M2/1‑4 (MQ=255)

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATG‑CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCAC  >  NC_000913/572329‑572613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.