New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	213083 =	39 (1.180)	3 (0.090)	3/256	NT	7.6%	coding (753/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase
	?	NC_000913	213120 =	35 (1.090)					coding (790/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase

GCCGAAGCAACGGCCCGCAGCGCCGCACTTTGTGCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGATGCCTCACCCTGTTTACGTTTGGGCGCGTTT  >  NC_000913/212946‑213224                                                                                                                                          |                                                                                                                                              gCCGAAGCAACGGCCCGCAGCGCCGCACTTTGTGCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCccg                                                                                                                                          >  2:57436/1‑143 (MQ=255)  ccGAAGCAACGGCCCGCAGCGCCGCACTTTGTGCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCAAATGCGGGCGCTAGGGGATGCccgc                                                                                                                                         >  1:423966/1‑143 (MQ=255)      cgCAGCGGCCCGCAGCGCCGCGCGTTGTGGTGTACCGGAGAGCCGGCTGGGTGTGCTGCTGGCTGGTTCTTGAGCACACGGCCAATCGCCGCAGGGGACGCTGCAGATTCTGCCAATGCTGGCGATGAGTGATGCCCGCcgcg                                                                                                                                     <  2:371145/142‑1 (MQ=255)       gcgaCGGCCCTCAGGGCCGCAGTTGGTGCGGGACACGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCcgcgc                                                                                                                                    <  2:660354/140‑1 (MQ=255)           cGGCCCGCAACGCCGCACTTTGTGCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCgcggcg                                                                                                                                >  2:418656/1‑143 (MQ=255)                                gtgCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCtggctggcc                                                                                                           >  2:190558/1‑142 (MQ=255)                                 tgCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCtggctggccg                                                                                                          >  1:290074/1‑141 (MQ=255)                                 caacgcgcccaaacgtaaacagggtgaggcatcttcccgcgccagcgccactccctgccagatcctcaccaacgcgtcgcgggaaggcatcggtgcattctgcccTGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTggcag                                                                                                          >  2:626634‑M1/106‑143 (MQ=255)                                  gCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGTTGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTggcagg                                                                                                         <  1:390101/143‑1 (MQ=255)                                   cTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTggcaggg                                                                                                        >  2:620779/1‑143 (MQ=255)                                   cTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGAAGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGAGTATCCGCCGCCGGCTggcaggg                                                                                                        >  1:351904/1‑143 (MQ=255)                                     gAACAAGAGAGCCGGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTggcagggca                                                                                                      <  1:616763/143‑1 (MQ=255)                                        cccaaacgtaaacagggtgaggcatctacccgcgccagcgccacttcctgccagatcctcaccaacgcgtcgcgggaatacatcggtgcattctgcccTGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGaa                                                                                                   >  1:191727‑M1/99‑143 (MQ=255)                                           gagagCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGc                                                                                                >  1:142204/1‑143 (MQ=255)                                           aaacgtaaacagggtgaggcatcttcccgcgccagcgccacttcctgccagatcctcaccaacgcgtcgcgggaaggcatcggtgcattctgccc‑‑‑‑‑GCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGa                                                                                           >  1:40099‑M1/96‑143 (MQ=255)                                            agagCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCCGGGGACGCTGCAGAGCGTGCCCATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCCCCGCTGGCTCGCAGGGCAGAATCCa                                                                                               >  1:608044/1‑143 (MQ=255)                                            agagCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCa                                                                                               >  1:84040/1‑143 (MQ=255)                                                     tgGGTGACCTGCGGGGAGATGGTTTAGCGCACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCt                                                                                      <  2:389872/143‑1 (MQ=255)                                                       gATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTc                                                                                    >  2:381563/1‑143 (MQ=255)                                                               gctgGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGCTGAGTGCTGCCCGCCGCGCGGAGATTATCCGCCGCTGGCTGGCCGGGCAGCATGCACCGATGCCTTCCCGCGAcg                                                                            >  2:291681/1‑143 (MQ=255)                                                                   gCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGtt                                                                        >  1:641234/1‑143 (MQ=255)                                                                    cAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGACGAGTGATGCCCGCCGCGCGGCGCTTCTCCGCCGCTCGCGGGCAGCGCGGAATGCACCGCTCCCAGCCCGCGACGCGTTg                                                                       >  2:287098/1‑143 (MQ=255)                                                                        tgacTTTGCACACTGTCAATCGTCGCAGGTGACGCTGTAGATTGTGCTAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATGATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGa                                                                   <  1:2779/143‑1 (MQ=255)                                                                         gatTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAg                                                                  <  1:57436/143‑1 (MQ=255)                                                                          gtgtAGGACACTGTCAATCGGCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAgg                                                                 <  2:54926/140‑1 (MQ=255)                                                                          atTTAGCACACTGTCACTCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGCTGCCCGCCGCGCGTCGATTATCCTCCGCTGTCTGGCCGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAgg                                                                 <  1:45243/143‑1 (MQ=255)                                                                          atTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAgg                                                                 >  1:264487/1‑143 (MQ=255)                                                                          atTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAgg                                                                 >  2:222774/1‑143 (MQ=255)                                                                            ttAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCATAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGAt                                                               <  1:629389/143‑1 (MQ=255)                                                                               gCACACTGTCGCGCGCCGGAGGGGACGCTGCCGCTTGTGCCAATGCTGGCGAGGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGCCGCGTTGGTTAGGATCTg                                                            <  2:405023/143‑1 (MQ=255)                                                                                 acacCGTCAGTCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCGGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGc                                                          <  2:318018/143‑1 (MQ=255)                                                                                    cTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAgg                                                       <  1:620779/143‑1 (MQ=255)                                                                                         aaTCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGtg                                                  >  1:445330/1‑143 (MQ=255)                                                                                           tCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGtggc                                                >  2:9014/1‑143 (MQ=255)                                                                                              ccgcGGGGGACGCTGCAGATTGGGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGtggcgct                                             <  2:149108/143‑1 (MQ=255)                                                                                                 cAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCAGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGGGAGGATCTGGCAGGAAGtggcgctggc                                          >  2:412510/1‑143 (MQ=255)                                                                                                    gggACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGcgcg                                       <  1:324661/143‑1 (MQ=255)                                                                                                          cTGCAGATTGTGCCAATGCTGGCGATGAGTGAAGCCGGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGa                                 <  2:288510/143‑1 (MQ=255)                                                                                                                       cAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGATGCCTCACCCTGt                    >  1:429748/1‑143 (MQ=255)                                                                                                                             tGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGCAGATGCCTCACCCTGTTTACGt              >  2:618411/1‑143 (MQ=255)                                                                                                                             tGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGCGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGATGCCTCACCCTGTTTACGt              >  1:590588/1‑143 (MQ=255)                                                                                                                                cGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGATGCCTCACCCTGTTTACGTTTg           <  1:418656/143‑1 (MQ=255)                                                                                                                                  aggagggcTGCGCGCCGGGCGGCGATTATCCGCCGCGGGGTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCTCTGGCGCGGGAAGATGCCTCACCCTGTTTACGTTTggg         >  2:142204‑M1/9‑143 (MQ=255)                                                                                                                                     ggTGATGCCCGCCGCGCGGCGATGATCCGCCGCTGGCGGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGATGCCTCACCCTGTTTACGTTTGGgcgc      <  2:102010/142‑1 (MQ=255)                                                                                                                                         aTGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGATGCCTCACCCTGTTTACGTTTGGGCGCGttt  >  1:326282/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                              GCCGAAGCAACGGCCCGCAGCGCCGCACTTTGTGCTGAACAAGAGAGCCTGCTGGATGAACTGCTGGCAGATGATTTAGCACACTGTCAATCGCCGCAGGGGACGCTGCAGATTGTGCCAATGCTGGCGATGAGTGATGCCCGCCGCGCGGCGATTATCCGCCGCTGGCTGGCAGGGCAGAATGCACCGATGCCTTCCCGCGACGCGTTGGTGAGGATCTGGCAGGAAGTGGCGCTGGCGCGGGAAGATGCCTCACCCTGTTTACGTTTGGGCGCGTTT  >  NC_000913/212946‑213224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.