| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3600976 = | 36 (1.090) | 3 (0.100) | 3/240 | NT | 8.5% | intergenic (‑193/+52) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/cell division protein FtsX |
| ? | NC_000913 | 3601013 = | 32 (1.060) | intergenic (‑230/+15) | rpoH/ftsX | RNA polymerase, sigma 32 (sigma H) factor/cell division protein FtsX | |||||
CCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGAGCATACCAGCAGCAATAGCAG > NC_000913/3600837‑3601117 | ccAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTctct > 2:238820/1‑143 (MQ=255) cAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCtt < 1:386735/143‑1 (MQ=255) ttgatatcaatggcttatcattcgatgaatgcctgctattgctgctggtatgctcgatgattggctgcgtggcagcgtggcttgccacggtacaacatttacgccactttacgcctgaataataaaagcgagttatcCACttt < 2:328861‑M1/6‑1 (MQ=255) agagCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCttt < 2:458489/143‑1 (MQ=255) tgatatcaatggcttatcattcgatgaatgcctgctattgctgctggtatgctcgatgattggctgggtggcagcgtggcttgccacggtacaacatttacgccactttacgcctgaataataaaagcgtgttataCTCTTTc < 1:76221‑M1/7‑1 (MQ=255) ttAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTg > 1:109757/1‑143 (MQ=255) aatggcttatcattcgatgaatgcctgctattgctgctggtatgctcgatgattggctgggtggcagcgtggcttgccacggtacaacatttacgccactttacgcctgaataataaaagcgtgttataCtcattcccgccaa < 2:389164‑M1/14‑6 (MQ=255) tCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAg < 1:483333/143‑1 (MQ=255) tCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAAACCAGTGCAg > 2:651548/1‑143 (MQ=255) aTTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTAGGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTCCAagg > 2:512243/1‑143 (MQ=255) cACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGaaa < 1:170895/143‑1 (MQ=255) gTTTTATCAGACTGTGATGTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt < 2:389547/143‑1 (MQ=255) tttATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTGCCCTGCTACGGAACCCATTGCAGGGAAAGAGtat < 1:451921/143‑1 (MQ=255) tATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGAGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCATCCCCTGCTCAGGACCCCACTGCACGGAAAGAGcatca > 2:278960/1‑141 (MQ=255) cGTGAGTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCttt < 2:479669/143‑1 (MQ=255) tGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCtttga > 2:628179/1‑141 (MQ=255) ttttATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACAGGAAAGAGACAACGGGATCTCTTTCCCTGCTCCGGAACCCGCGGAAGGCGCAGCGTATCACACGCTTctagag > 2:553845/1‑140 (MQ=255) ttATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAGATGTGACATAGAGATGAAATACCGGGACGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATCGCGGGGAAAGACTATACCCCGCTGTTactatt > 2:167609/1‑143 (MQ=255) agatgattggctgggtgggagcgtggcttgccacgggacaacatttacgccactttacgcctgaataataaaagcgtgttataCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAg > 1:506147‑M1/84‑143 (MQ=255) acaAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGATTTTATTATGAAGGCg > 1:289933/1‑143 (MQ=255) ttCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAg > 1:105760/1‑143 (MQ=255) ttCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAg > 1:612302/1‑143 (MQ=255) ttCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAAACAAGGGGGTCTCTTTCCCTGCTACGGAACCGATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCATGCGTAAAg > 1:490287/1‑143 (MQ=255) aggCAAGCGAGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGc < 1:174992/141‑1 (MQ=255) aaTAAATTACGCACAAAATGTGACATCGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGCAAGAGTATAACACGCTTGTATTATTCAGGCGTAAAGTGGCGTAACTACTGTAc > 2:409202/1‑143 (MQ=255) aTTACGCACAACATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACACATTGCAGGGAAAGAGTATAACACGCTTATACTATTCAGAAGTAAAGCGGCGTAAATGTAGTACCATgg > 2:454710/1‑143 (MQ=255) aTTACGCACAAAATGTGACATAGAGATGCAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGGATAACACGCTTTTATTATTCAGGCGTACAGTGGCGCAACCGTTGTACCGTgg > 2:291300/1‑143 (MQ=255) caagaggtgACATGGAGATGAAAGACCGGGAAGAGACAACGGGGTCTCGTTCCCTGCTACGGAACCCATTGCAGGGGAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCAc < 1:378499/137‑1 (MQ=255) caAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCAc < 1:422757/143‑1 (MQ=255) tgtgACATAGAGATGAAATACCGGGAAGAGACAACGGTGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGc < 2:142310/143‑1 (MQ=255) tgtgACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGc < 1:628506/143‑1 (MQ=255) gccactttacgcctgaataataaaagcgtgttataCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCATGCGTAAAGTGGCGTAAATGGTGTACCGTGGCAAGCAACGCTGcccccc < 2:167624‑M1/108‑1 (MQ=255) aTAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGGATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCa > 1:306993/1‑143 (MQ=255) tAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGGGGCAAGCGACGCTGCCACCCAg > 2:120042/1‑143 (MQ=255) cgagcTGAACTACCGGGAAGAGACGACGGCGTCTCTTTCCCTGCTCCGGAACCGAGTGCAGGGAAAGAGTATCACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAACTGTTGTACCGTGGCAAGCCACGCTGCCACCCAGc < 2:287444/142‑1 (MQ=255) gacaTGAACTACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGcc < 2:102638/140‑1 (MQ=255) gaTGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTCGCAAACCACGCTGCCACCTATCCaa > 1:284871/1‑143 (MQ=255) gaTCAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCaa < 1:238820/143‑1 (MQ=255) aaTACCGAGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAGGGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTAGCAAGCCACGCTGCCACCCAGCCAatcatc < 1:537653/143‑1 (MQ=255) tACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGa < 1:306971/143‑1 (MQ=255) gAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGAGCATAc > 2:287800/1‑143 (MQ=255) gaCAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAACTGGCGTAAATGTTGTACCGTTGCAAGCCACGCTGCAACCAAGACAATCAACAAGAATAcaaaaa > 1:418793/1‑138 (MQ=255) agcgtgttataCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGAGCATACcagca > 1:167624‑M1/12‑143 (MQ=255) aaCGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGAGCATACCAgcagca > 1:491034/1‑143 (MQ=255) gggTCTGTTTCCCTGGTTCGGAACCCATTGCAGGGAAAGGGTATAACACGCTTTTCTTATTCAGGCGTAAAGTGGCGTAAATGTCGTACCGTGGCCAAATCTTCATCCACCCAGCCAATCATCGAGCATACCAGCAGCAATAg < 2:294967/143‑1 (MQ=255) gTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGAGCATACCAGCAGCAATAGCa < 2:105760/143‑1 (MQ=255) tctcTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACACAGCCAATCATCGAGCATACCAGCAGCACTAGCAg > 1:493329/1‑143 (MQ=255) tctcTTGCCCTGCTACGGACCCCGTTGCAGTGAAAGCGTCTAACGCTCTGTTAGTATTCAGGCGTACAGTTGCGTCAATTGGGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGATCATACCAGCAGCAATAGCAg < 2:228090/143‑1 (MQ=255) | CCAGAGCTTAAGAGCAACGAGGTTATCATTCACTGTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACCCAGCCAATCATCGAGCATACCAGCAGCAATAGCAG > NC_000913/3600837‑3601117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |