New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3600976 =	36 (1.090)	3 (0.100)	3/240	NT	8.5%	intergenic (‑193/+52)	rpoH/ftsX	RNA polymerase, sigma 32 (sigma H) factor/cell division protein FtsX
	?	NC_000913	3601013 =	32 (1.060)					intergenic (‑230/+15)	rpoH/ftsX	RNA polymerase, sigma 32 (sigma H) factor/cell division protein FtsX

GTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCATCGAATGATAAGCCATTGATATCAAAC  >  NC_000913/3600871‑3601151                                                                                                                                               |                                                                                                                                            gTTTTATCAGACTGTGATGTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGt                                                                                                                                             <  2:389547/143‑1 (MQ=255)   tttATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTGCCCTGCTACGGAACCCATTGCAGGGAAAGAGtat                                                                                                                                           <  1:451921/143‑1 (MQ=255)     tATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGAGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCATCCCCTGCTCAGGACCCCACTGCACGGAAAGAGcatca                                                                                                                                         >  2:278960/1‑141 (MQ=255)           tgctggtatgctcgatgattggctgggtggcagcgtggcttgccacggtacaacatttacgccactttacgcctgaataataaaagcgtgttatactctttccctgcaatgggttccgtagcagggaaagagTATAACACGCt                                                                                                                                   >  1:167624‑M2/133‑143 (MQ=255)             cGTGAGTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCttt                                                                                                                                 <  2:479669/143‑1 (MQ=255)               tGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCtttga                                                                                                                               >  2:628179/1‑141 (MQ=255)                  ttttATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACAGGAAAGAGACAACGGGATCTCTTTCCCTGCTCCGGAACCCGCGGAAGGCGCAGCGTATCACACGCTTctagag                                                                                                                            >  2:553845/1‑140 (MQ=255)                    ttATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAGATGTGACATAGAGATGAAATACCGGGACGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATCGCGGGGAAAGACTATACCCCGCTGTTactatt                                                                                                                          >  2:167609/1‑143 (MQ=255)                       agatgattggctgggtgggagcgtggcttgccacgggacaacatttacgccactttacgcctgaataataaaagcgtgttataCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAg                                                                                                                       >  1:506147‑M1/84‑143 (MQ=255)                          acaAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGATTTTATTATGAAGGCg                                                                                                                    >  1:289933/1‑143 (MQ=255)                               ttCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAg                                                                                                               >  1:105760/1‑143 (MQ=255)                               ttCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAg                                                                                                               >  1:612302/1‑143 (MQ=255)                               ttCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAAACAAGGGGGTCTCTTTCCCTGCTACGGAACCGATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCATGCGTAAAg                                                                                                               >  1:490287/1‑143 (MQ=255)                                   ggggggcagcgttgcttgccacggtacaccatttacgccactttacgcatgaataataaaagcgtgttatactctttccctgcaatgggttccgtagcagggaaagagTATAACACGCTTTTATTATTCAGGCGTAAAGTGGc                                                                                                           <  2:167624‑M2/35‑1 (MQ=255)                                   aggCAAGCGAGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGc                                                                                                           <  1:174992/141‑1 (MQ=255)                                                aaTAAATTACGCACAAAATGTGACATCGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGCAAGAGTATAACACGCTTGTATTATTCAGGCGTAAAGTGGCGTAACTACTGTAc                                                                                              >  2:409202/1‑143 (MQ=255)                                                     aTTACGCACAACATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACACATTGCAGGGAAAGAGTATAACACGCTTATACTATTCAGAAGTAAAGCGGCGTAAATGTAGTACCATgg                                                                                         >  2:454710/1‑143 (MQ=255)                                                     aTTACGCACAAAATGTGACATAGAGATGCAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGGATAACACGCTTTTATTATTCAGGCGTACAGTGGCGCAACCGTTGTACCGTgg                                                                                         >  2:291300/1‑143 (MQ=255)                                                             caagaggtgACATGGAGATGAAAGACCGGGAAGAGACAACGGGGTCTCGTTCCCTGCTACGGAACCCATTGCAGGGGAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCAc                                                                                 <  1:378499/137‑1 (MQ=255)                                                             caAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCAc                                                                                 <  1:422757/143‑1 (MQ=255)                                                                  tgtgACATAGAGATGAAATACCGGGAAGAGACAACGGTGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGc                                                                            <  2:142310/143‑1 (MQ=255)                                                                  tgtgACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGc                                                                            <  1:628506/143‑1 (MQ=255)                                                                       gccactttacgcctgaataataaaagcgtgttataCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCATGCGTAAAGTGGCGTAAATGGTGTACCGTGGCAAGCAACGCTGccccc‑c                                                                      <  2:167624‑M1/108‑1 (MQ=255)                                                                        aTAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGGATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑Ca                                                                     >  1:306993/1‑143 (MQ=255)                                                                         tAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGGGGCAAGCGACGCTGCCACC‑CAg                                                                    >  2:120042/1‑143 (MQ=255)                                                                          cgagcTGAACTACCGGGAAGAGACGACGGCGTCTCTTTCCCTGCTCCGGAACCGAGTGCAGGGAAAGAGTATCACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAACTGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGc                                                                   <  2:287444/142‑1 (MQ=255)                                                                           gacaTGAACTACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGcc                                                                  <  2:102638/140‑1 (MQ=255)                                                                             gaTGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTCGCAAACCACGCTGCCACC‑TATCCaa                                                                >  1:284871/1‑143 (MQ=255)                                                                             gaTCAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCaa                                                                <  1:238820/143‑1 (MQ=255)                                                                                  aaTACCGAGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCAGGGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTAGCAAGCCACGCTGCCACC‑CAGCCAatcatc                                                           <  1:537653/143‑1 (MQ=255)                                                                                   ctgaataataaaagcgtgttatactctttccctgcaatgggttccgtagcagggaaagagTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTCCCGTGGCAAGCCACGCTCCCACC‑CAGCCaatcatct                                                          >  1:506147‑M2/61‑142 (MQ=255)                                                                                    tACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGa                                                         <  1:306971/143‑1 (MQ=255)                                                                                          gAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATAc                                                   >  2:287800/1‑143 (MQ=255)                                                                                               gaCAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAACTGGCGTAAATGTTGTACCGTTGCAAGCCACGCTGCAACC‑AAGACAATCAACAAGAATAcaaaaa                                              >  1:418793/1‑138 (MQ=255)                                                                                               agcgtgttataCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACcagca                                              >  1:167624‑M1/12‑143 (MQ=255)                                                                                                  aaCGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAgcagca                                           >  1:491034/1‑143 (MQ=255)                                                                                                      gggTCTGTTTCCCTGGTTCGGAACCCATTGCAGGGAAAGGGTATAACACGCTTTTCTTATTCAGGCGTAAAGTGGCGTAAATGTCGTACCGTGGCCAAATCTTCATCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAg                                       <  2:294967/143‑1 (MQ=255)                                                                                                        gTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCa                                     <  2:105760/143‑1 (MQ=255)                                                                                                         tctcTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACA‑CAGCCAATCATCGAGCATACCAGCAGCACTAGCAg                                    >  1:493329/1‑143 (MQ=255)                                                                                                         tctcTTGCCCTGCTACGGACCCCGTTGCAGTGAAAGCGTCTAACGCTCTGTTAGTATTCAGGCGTACAGTTGCGTCAATTGGGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGATCATACCAGCAGCAATAGCAg                                    <  2:228090/143‑1 (MQ=255)                                                                                                          gTCTTGCCCGGCTGCGGAACCCAGTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAgg                                   >  1:493987‑M1/2‑143 (MQ=255)                                                                                                               TCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGcatcc                              <  1:374997‑M1/143‑3 (MQ=255)                                                                                                                 CCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCAt                            <  1:374849‑M1/143‑1 (MQ=255)                                                                                                                 CCTGCTACCGAACCCATTGCAGGGAAAGAGTATAACACGCTTTCATTATTCAGGCGTAAAGTCGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCAt                            >  2:623604‑M1/1‑143 (MQ=255)                                                                                                                  CTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCATc                           <  2:349632‑M1/143‑1 (MQ=255)                                                                                                                           aaCCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCCAGCATACCAGCAGCAATAGCAGGCATTCATCCAAAGATaa                  >  2:283450/1‑143 (MQ=255)                                                                                                                                aTTGCAGGGAAAGAGTATAACACGCTTTTATTGTTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCATCGAATGATAAGCCAt             <  2:26667/143‑1 (MQ=255)                                                                                                                                 ttggcgggaatgagTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCATCGAATGATAAGCCAtt            <  2:389164‑M2/129‑1 (MQ=255)                                                                                                                                 ctGCAGGCAAATGGTATCACCAGCTTTTATCATTCCGGCGTGAAGTGGCGTAAAGTTTGTACCGTGGCCAGCCATGCTGCCTCC‑CATCCAATCAGTGAGCATACCAGCAGCAATAGCAGGCATTCATCGAATGATAAGCCAtt            <  2:445585/142‑1 (MQ=255)                                                                                                                                        gaaagagTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCATCGAATGATAAGCCATTGATATCa     <  1:76221‑M2/136‑1 (MQ=255)                                                                                                                                         aaagtgGATAACTCGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACG‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCATCGAATGATAAGCCATTGATATCaa    <  2:328861‑M2/137‑1 (MQ=255)                                                                                                                                           agagTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCATAAAAGTTGTGTC‑AGTTAATGCGCGGATCCATCTCGGCTTTACATCGAGCATACCAGCAGCAATAGAAGGCATTGATCGAATGATCAGCCATTGATATCAAAc  >  1:660019/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                            GTTTTATCAGACCGTGATTTTATCCACAAGTTCAATGCAAGCTTGTGAATAAATTACGCACAAAATGTGACATAGAGATGAAATACCGGGAAGAGACAACGGGGTCTCTTTCCCTGCTACGGAACCCATTGCAGGGAAAGAGTATAACACGCTTTTATTATTCAGGCGTAAAGTGGCGTAAATGTTGTACCGTGGCAAGCCACGCTGCCACC‑CAGCCAATCATCGAGCATACCAGCAGCAATAGCAGGCATTCATCGAATGATAAGCCATTGATATCAAAC  >  NC_000913/3600871‑3601151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.