| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4285380 | NA (NA) | 3 (0.160) +CTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGC |
3/152 | NT | NA | intergenic (‑167/+33) | yjcH/acs | conserved inner membrane protein YjcH/acetyl‑CoA synthetase (AMP‑forming) |
| ? | NC_000913 | = 4460444 | NA (NA) | noncoding (29/36 nt) | other | REP338a | |||||
TTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCT > NC_000913/4285251‑4285502 | ttCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGCTGCGACGCTGTCGCGTCTGATCAGGCCGACAGACCGTTACCGACt > 1:36532/1‑143 (MQ=255) tcTCCCATAAGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCAt > 1:550317/2‑143 (MQ=255) ccTCATGGGAGAAGGTGAACGCGCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCggg < 1:627563/143‑1 (MQ=255) agcgggTTGACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGGTAAGGCGTTTTCGCCGCCTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCGACAAACCGTTACCGACTCGCATCGGGCAATTGTgg < 2:538343/139‑1 (MQ=25) gggTAACCCTGGCCGAATGGAGGCGGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcg < 1:212010/143‑1 (MQ=255) ttGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCCATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCt > 1:644656/1‑143 (MQ=255) ttGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCt > 2:55749/1‑143 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAagc < 1:55749/143‑1 (MQ=255) gTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGAc < 1:662687/143‑1 (MQ=255) aCGCCGCATCTGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACg < 2:207878/143‑1 (MQ=255) tgccgcaCCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAActattgccgacctgtaggccggataaggcacttgtgccgcatccggcaatcaatgcctgataagacgcgacagcgtcgcatcagg < 1:145980‑M1/142‑86 (MQ=255) cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGc < 2:550317/143‑1 (MQ=255) gccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCCAGCAGCTTCCTGACTACGct > 1:236615/1‑142 (MQ=255) gccgcATCCGGCAATCAATACATAATGAGACGCTGTCGCGTCTTATCAGGCCTACAAAGAGTTACCGACTCGCATCGGGGAATTCAGGGGTACGATGGCAACGAGATAAGCCGCTTCTCTTCAAGCAGCATCTCTGCTACGcc > 2:325515/1‑143 (MQ=21) cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAAGCGTTACCGACTAGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAGGCAGCTTCTCGGCTCCTCCAg > 1:637915/1‑143 (MQ=37) cATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCCTCTCTTCAAGCAGCTCCTCGACTACGCCAggc > 2:272150/1‑142 (MQ=255) cATCCGGCAATCAATGCCTGATGCGACGCGGCCGCGTCTTATCAGGCCTACAAGCAGGCACCAACCAGCCAAGCGATCGTGTCGGTTACGATGCCATCGCGATAGCCTACTACTCTTCAAACACCTTCTCGACTACGCCAgca > 2:469191/1‑141 (MQ=12) tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACCAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCACGCACCTTCCCGACTACGCCAgaagg > 2:224417/1‑139 (MQ=38) ccGGCAATGAATGCCTTATGCGACGCTGTCGCGTCTTATCAGGCTTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCg < 2:1200/143‑1 (MQ=255) ccGGCAATCAAGGCCTGATGCGACGCCGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCg < 1:277550/143‑1 (MQ=255) ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAAACGGGTGTTGCGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTCCGCCAGGCTCGGc > 1:659451/1‑143 (MQ=37) ctcaatcaatGCCTGATGCGACGCTCTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCCTCGCGATAGCCTGCTTATCTTCATGCAGCTTCTCGACTACGCCAGGATCGGc < 2:502870/141‑1 (MQ=255) aatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAGCCGTTACCGCCTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAg < 1:472303/143‑1 (MQ=255) atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAActattgccgacctgtaggcctgataaggcacttgtgc > 1:262645‑M1/1‑40 (MQ=255) gCCTGATGCGACGCTGTCGCGTCCTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAg < 1:46767/143‑1 (MQ=255) ccTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAActattgccgacctgtaggcctgataaggcacttgtgccgcatccggcaatcaatgcctgataagacgcgacagcgtcgcatcaggcatt > 1:544444‑M1/1‑37 (MQ=255) ccTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAActattgccgacctgtaggcctgataaggcacttgtgccgcatccggcaatcaatgcctgataagacgcgacagcgtcgcatcaggcatt < 2:544444‑M1/126‑90 (MQ=255) gACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCCTCTCTTCAAGCAGCTTCTCGGCTGCGCCAGGATCGGCTAGCGTCGAGGTGTCGccc > 1:430849/1‑143 (MQ=255) cccccgccgcgTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCa < 1:543449/136‑1 (MQ=255) gTCGCGTCTTATCAGGCCTAGAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTg < 2:315161/143‑1 (MQ=255) cgcgTCTTATCAGGCCTACAAATCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCt < 1:492879/143‑1 (MQ=255) | TTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCT > NC_000913/4285251‑4285502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |