New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4285380	NA (NA)	3 (0.160) +CTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGC	3/152	NT	NA	intergenic (‑167/+33)	yjcH/acs	conserved inner membrane protein YjcH/acetyl‑CoA synthetase (AMP‑forming)
	?	NC_000913	= 4460444	NA (NA)					noncoding (29/36 nt)	other	REP338a

GGTGCAACGAGTGCCGGGGCCGTTGACGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCA  >  NC_000913/4460305‑4460582                                                                                                                                            |                                                                                                                                           ggTGCAACGAGTGCCGGGGCCGTTGACGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGAAGCTGTCGCGGCTTATCAGAcc                                                                                                                                         >  1:272740/1‑143 (MQ=255)   ttcAACGAGTGCCGGTGCCGTTGACGATGTCGACAGGATAGTACTTATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTg                                                                                                                                       <  2:265168/141‑1 (MQ=255)      aaCGAGTGCCGGGGCCGTTGACGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCATGGCTGATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTGATCAGACCAGGAg                                                                                                                                    >  2:538115/1‑143 (MQ=255)          aGTGCCGGGGCCGTTGACGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAAt                                                                                                                                <  1:639177/143‑1 (MQ=255)               cGGGGCCGTTGACGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGGGTAGGCTGCATCCGGTAATAAATGCCTGATGCGACGCTGTCGCGTCCGCTCAGACCTGGAGCCACTGCCa                                                                                                                           >  2:367522/1‑143 (MQ=255)                     cGTTGACGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCAGGTAATCAATGCCAGATGCGACGCTGTCGCGTCTTATTCGACCTGGAGCAATTGCCAAATGTa                                                                                                                     >  1:286444/1‑143 (MQ=255)                           cGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCgg                                                                                                               >  1:559567/1‑143 (MQ=255)                            gATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGATCAATTGCCAGACGAAGGCCgaa                                                                                                              >  2:558629/1‑141 (MQ=255)                            gATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCggg                                                                                                              >  1:443462/1‑142 (MQ=255)                            gATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGa                                                                                                              <  1:43916/143‑1 (MQ=255)                                tCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCACTTGCCAAATGTAGGCCGGATacg                                                                                                          >  1:619027/1‑141 (MQ=255)                                       gATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTa                                                                                                   >  2:297525/1‑143 (MQ=255)                                            tACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTAcgccg                                                                                              >  2:474752/1‑143 (MQ=255)                                                   gatAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                                       <  1:133590/143‑1 (MQ=255)                                                        ttCATTATTTCGCCTGGCTTATCCGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCCGTCGCGTCTTATCAGACCTGGAGCAATTGCCAACTGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGccgtt                                                                                  >  2:547298/1‑139 (MQ=37)                                                         tCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAGTTGGCAAAAGGAGGCCGGATAAGTGGTTTACGCCGCATCCGGCCTTTg                                                                                 >  1:479049/1‑143 (MQ=38)                                                          cATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGc                                                                                <  1:410679/143‑1 (MQ=255)                                                          cATTATTTCGCCTGACTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGc                                                                                <  1:585987/143‑1 (MQ=255)                                                              attTCGCCTGTCTTATCAGTCCGCGTGTAGGCTGCATCCTGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAg                                                                            <  2:51787/143‑1 (MQ=255)                                                               tttCGCCTGGCGTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGc                                                                           <  2:428961/143‑1 (MQ=255)                                                                       ggCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTg                                                                   >  1:406022/1‑143 (MQ=255)                                                                                   cgcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTa                                                       >  1:648100/1‑143 (MQ=255)                                                                                   cgcgTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTa                                                       >  1:223172/1‑143 (MQ=255)                                                                                        gtAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGc                                                  <  2:173796/143‑1 (MQ=255)                                                                                         tAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGcc                                                 >  1:400241/1‑143 (MQ=255)                                                                                             cTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCAtt                                             <  2:548496/143‑1 (MQ=255)                                                                                                 aTCCGGTAATCAATGCCTGATGCGACGCTGTCGAGTCTTATCAGACCTGGAGCAACTGCCCAATGTACGCCGGCTCAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCGCAGGGTGAAGATTAGCCCAGGTGCCCATCcccc                                         >  1:99012/1‑143 (MQ=25)                                                                                                 aTCCGGTAATAAATGCCTTATGCGACGCTGTCGCGTCTTATTAGACCTGGAGTAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTATCCTATCTGCCCATTcccc                                         <  2:204002/143‑1 (MQ=38)                                                                                                    ggctAATCAATGCTTGATTCCCTGCTGTGGCCTCTTCACAGACCTGGTGCAATCTCCAAATCTAGGCCTGATAATGCTTTTACGCCCCATCCGGCATCTGCTTAGCTCAGAGTGAAGACTAACCTATCTGCCCATTCCCCaaa                                      <  2:556859/140‑1 (MQ=255)                                                                                                     ggTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTcccccagt                                     >  1:136860/1‑139 (MQ=255)                                                                                                     ggTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCGGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAAt                                     <  1:126904/143‑1 (MQ=255)                                                                                                       tAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCATACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGt                                   <  1:392875/143‑1 (MQ=255)                                                                                                       tAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCTGCTTAGGTCAGAGTGAAGATTAACCTATCTGCCCCTTCACCAAATgc                                   >  2:60712/1‑142 (MQ=255)                                                                                                           cAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTaa                               >  2:617546/1‑143 (MQ=255)                                                                                                           cAATGCCGTATGCGATGCTGTCTCGGCTTATAAGATCTTGAGAAATTGCCAAATGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTaa                               <  1:260066/143‑1 (MQ=37)                                                                                                            aaTGCCTGATGCGACGCTGTCGCGTCTTATCAGgcattgattgccggatgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcagg                                               >  1:544444‑M2/1‑33 (MQ=255)                                                                                                            aaTGCCTGATGCGACGCTGTCGCGTCTTATCAGgcattgattgccggatgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcagg                                               <  2:544444‑M2/126‑94 (MQ=255)                                                                                                            aaTGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCTCCAAATGTTTAAc                              >  1:629854/1‑143 (MQ=255)                                                                                                            aaTGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTaaa                              >  1:483597/1‑142 (MQ=255)                                                                                                                ccTGATGCGACGCTGTCGCGTCTTATCAGgcattgattgccggatgcggcacaagtgccttatccggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattgccgggtgcggca                          <  1:145980‑M2/143‑115 (MQ=255)                                                                                                                ccTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACgcgg                          >  2:137957/1‑143 (MQ=255)                                                                                                                     tGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCCGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCtc                     >  1:376167/1‑142 (MQ=255)                                                                                                                     tGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTaa                               <  1:77590/133‑1 (MQ=255)                                                                                                                     tGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTaa                               >  2:77590/1‑133 (MQ=255)                                                                                                                        gACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAAc                  <  2:209575/143‑1 (MQ=255)                                                                                                                        gACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCAATCCCCCAAACGTTTAACGCGGCGCTTAAc                  >  2:104913/1‑143 (MQ=255)                                                                                                                        gACGCTGTCGCGTCTTATCAGACCTGGACACATTGTTAAATGTGTTGCGGATGAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAAc                  >  1:629855/1‑143 (MQ=255)                                                                                                                               ccgcgTCTGATCAGACCTCGAGCAATTGCCAAATGGTGGCCGGATCAGGCGTTTCCGCCGCAGCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTcc           <  1:520895/142‑1 (MQ=255)                                                                                                                                 gcgTCTTTTCAGAGCTGGAGCAATGGCCAAATGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACGTCTTCCTg         <  2:403906/143‑1 (MQ=39)                                                                                                                                    tCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCtt      >  1:164274/1‑143 (MQ=255)                                                                                                                                    tCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCtt      <  1:70127/143‑1 (MQ=255)                                                                                                                                        aTCAGACCTGGAGCAATGGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTGAACGCGGCGCTTAACTTCTTCCTGCTTACCa  <  2:28378/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                           GGTGCAACGAGTGCCGGGGCCGTTGACGATGTCGACAGGATAGTACTGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCA  >  NC_000913/4460305‑4460582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.