New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4365125 =	40 (1.210)	3 (0.100)	3/250	NT	7.4%	coding (232/339 nt)	cutA	copper binding protein CutA
	?	NC_000913	4365142 =	37 (1.180)					coding (215/339 nt)	cutA	copper binding protein CutA

TCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCA  >  NC_000913/4364983‑4365265                                                                                                                                               |                                                                                                                                             tCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGATTGATATCGATGATGAGACATCAGGCATTc                                                                                                                                              >  2:16539/1‑143 (MQ=255)      gaaatgcGGAGGTGCTGTAAAGTATCAGGATCAGCGTAAAGATTCGTTGAGCCAGGAGAGGTAAGCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGTTTAGACTTCAGGCATTCcagca                                                                                                                                         <  2:544483/137‑1 (MQ=255)      cAAAAACGGGAGTGCTGCAGAGTAGCANGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTNTGATATGGATGATGAGACTTCAGGCATNCcagca                                                                                                                                         <  2:508955/143‑1 (MQ=255)      cAAAAACGGATGTGCTGCAAAGTAGCAGGTTTATTGTAAAGATGCGTTGAGCCATGAGAGGGAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCcagca                                                                                                                                         <  1:356181/143‑1 (MQ=255)         aaaCGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATACCAGCAGTg                                                                                                                                      >  2:622465/1‑143 (MQ=255)          gaCGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGc                                                                                                                                     <  2:589341/142‑1 (MQ=255)                aagtgcttgcggaaaaactggcggcctgcgcgaccttgatccccggccctgtgcgtctgcagtactgggaaggtaagctggagcaagaatacgaagtgcagatgattttaaaaactaccgtatctcaCCAGCAGTGCctgctg                                                                                                                               >  1:303064‑M1/128‑143 (MQ=255)                        aaaGGAGCAGGATCAACGGAAAGATGCGGTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATa                                                                                                                       <  1:188930/143‑1 (MQ=255)                          aGTAGCAGGATCAGCGTAAAGAGGCGTTGAGTCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCAAGCTGGTGAGATACg                                                                                                                     <  2:582137/143‑1 (MQ=255)                          aGTACCAGCATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGGCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGTGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACg                                                                                                                     <  2:326722/143‑1 (MQ=255)                                              gATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACCGGTAAATCCAGAAGTTCCGGGGTTTTATATGGATGCTGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTg                                                                                                 <  2:86249/143‑1 (MQ=255)                                                accttgatccccggcgctacctctctctattactgggaaggtaagctggagcaagaatacgaagtgcagatgattttaaaaactaccgtatctcaCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCa                                                                                               >  1:506026‑M1/96‑143 (MQ=255)                                                    ttGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGGTTTGAAAATCCTCTGCACTTc                                                                                           >  2:248241/1‑143 (MQ=255)                                                          cATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTc                                                                                     <  1:115828/143‑1 (MQ=255)                                                          cATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTc                                                                                     <  1:67865/143‑1 (MQ=255)                                                           aTGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCt                                                                                    >  1:430773/1‑143 (MQ=255)                                                             gtgagGTAGTCTGTGTCTCCGTGTGTACCAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCTGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTg                                                                                  <  2:243100/141‑1 (MQ=255)                                                              cgctacctctctctattactgggaaggtaagctggagcaagaatacgaagtgcagatgattttaaaaactaccgtatctcaCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGc                                                                                 >  1:441430‑M1/82‑143 (MQ=255)                                                                 ggTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTcc                                                                              >  1:552761/1‑143 (MQ=255)                                                                   caaTCGGTGCCTGCGTGTGTATGCGGTAAAACCAGAAGTTCCGGGGTGTGATATGGATCATCAGACTTGAGGCATTCCAGCAGTGCCTGCTGGTGCTATACTTTAGTTTTTCAAATCATCTGCACTTCGTATTCTTGCTCCAg                                                                            <  2:201265/142‑1 (MQ=255)                                                                        tgtgTCTCCGAGTGTACCAGGTAAAACCAGACGTTCCGCGGTCTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGCGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTAc                                                                       <  1:401326/143‑1 (MQ=255)                                                                            tctcCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTTCTCCAGCTTACCTTc                                                                   >  1:435281/1‑143 (MQ=255)                                                                               gcGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCa                                                                <  2:26218/142‑1 (MQ=255)                                                                               ccGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCa                                                                <  1:347560/143‑1 (MQ=255)                                                                               ccGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCa                                                                >  2:241579/1‑143 (MQ=255)                                                                                 gtgtgtAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGt                                                              <  1:71415/143‑1 (MQ=255)                                                                                   gtgtAACAGGTAATACCAGGAGTGCCGGGGTTTGATATGTATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGTTGAGATACGGTAGTTTTTAACATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTaa                                                            <  2:52092/143‑1 (MQ=255)                                                                                   gtgtAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTCCCTCCCCAGTaa                                                            >  2:313671/1‑143 (MQ=255)                                                                                      tAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCAAGCTTACCGTCCCCGTAATag                                                         >  1:652251/1‑143 (MQ=255)                                                                                            gTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATagagagag                                                   <  1:226358/143‑1 (MQ=255)                                                                                                     gAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAAGCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCg                                          <  1:654998/143‑1 (MQ=255)                                                                                                      aaGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCgg                                         <  1:175934/143‑1 (MQ=255)                                                                                                         ttCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGAAGTTTGTAAAATCATCTGCACTTCGTATGCTTGCTCCAGCTTACCTTCCCAGTCATAGAAAGATGTAGCGCCgtgca                                      >  2:190150/1‑139 (MQ=255)                                                                                                                 tttGATATGGATGATGAGACTTCCGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGGATTCTTGCTCCAGCTTACCTTCCCAGTACTAGAGAGAGGTAGCGCCGGGGATCAAGGTc                              >  2:112091/1‑143 (MQ=255)                                                                                                                 tttAATATGGATGATGCGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTc                              <  1:16539/143‑1 (MQ=255)                                                                                                                      tatGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCa                         <  2:552761/143‑1 (MQ=255)                                                                                                                        tGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCACCGGGGATCAAGGTCGCGCAgg                       >  2:555823/1‑143 (MQ=255)                                                                                                                         ggATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGgc                      >  2:589989/1‑143 (MQ=255)                                                                                                                          gatgatGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGAGCAGGGTCGCGCAGgcc                     >  1:539971/1‑143 (MQ=255)                                                                                                                              atgaGACTTTAGGCATTCCAGCAGTGCCTGATAACTTCCTTCTTTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCa                 <  2:464613/143‑1 (MQ=255)                                                                                                                               tgaGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGAGCAAGGTCGCGCAGGCCGCCAg                >  2:582452/1‑143 (MQ=255)                                                                                                                                 agaCTTCAGGCATTCCAGCAGTGTCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGtt              <  2:365747/143‑1 (MQ=255)                                                                                                                                     ttCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCACGCCGCCCGTTTTTc          >  2:583512/1‑143 (MQ=255)                                                                                                                                        aGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGc       >  2:510467/1‑143 (MQ=255)                                                                                                                                          gCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTGCCGCCa     >  1:6638/1‑143 (MQ=255)                                                                                                                                             ttCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCATCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCa  >  2:320080/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                             TCCGGCAAAAACGGAAGTGCTGCAAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCA  >  NC_000913/4364983‑4365265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.