New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4365125 =	40 (1.210)	3 (0.100)	3/250	NT	7.4%	coding (232/339 nt)	cutA	copper binding protein CutA
	?	NC_000913	4365142 =	37 (1.180)					coding (215/339 nt)	cutA	copper binding protein CutA

AAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCACTTTGGCGG  >  NC_000913/4365006‑4365274                                                                                                                                         |                                                                                                                                     aaaGGAGCAGGATCAACGGAAAGATGCGGTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATa                                                                                                                                <  1:188930/143‑1 (MQ=255)   aGTAGCAGGATCAGCGTAAAGAGGCGTTGAGTCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCAAGCTGGTGAGATACg                                                                                                                              <  2:582137/143‑1 (MQ=255)   aGTACCAGCATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGGCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGTGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACg                                                                                                                              <  2:326722/143‑1 (MQ=255)                       gATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACCGGTAAATCCAGAAGTTCCGGGGTTTTATATGGATGCTGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTg                                                                                                          <  2:86249/143‑1 (MQ=255)                         accttgatccccggcgctacctctctctattactgggaaggtaagctggagcaagaatacgaagtgcagatgattttaaaaactaccgtatctcaCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCa                                                                                                        >  1:506026‑M1/96‑143 (MQ=255)                             ttGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGGTTTGAAAATCCTCTGCACTTc                                                                                                    >  2:248241/1‑143 (MQ=255)                                   cATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTc                                                                                              <  1:115828/143‑1 (MQ=255)                                   cATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTc                                                                                              <  1:67865/143‑1 (MQ=255)                                    aTGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCt                                                                                             >  1:430773/1‑143 (MQ=255)                                      gtgagGTAGTCTGTGTCTCCGTGTGTACCAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCTGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTg                                                                                           <  2:243100/141‑1 (MQ=255)                                       cgctacctctctctattactgggaaggtaagctggagcaagaatacgaagtgcagatgattttaaaaactaccgtatctcaCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGc                                                                                          >  1:441430‑M1/82‑143 (MQ=255)                                          ggTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTcc                                                                                       >  1:552761/1‑143 (MQ=255)                                            caaTCGGTGCCTGCGTGTGTATGCGGTAAAACCAGAAGTTCCGGGGTGTGATATGGATCATCAGACTTGAGGCATTCCAGCAGTGCCTGCTGGTGCTATACTTTAGTTTTTCAAATCATCTGCACTTCGTATTCTTGCTCCAg                                                                                     <  2:201265/142‑1 (MQ=255)                                                 tgtgTCTCCGAGTGTACCAGGTAAAACCAGACGTTCCGCGGTCTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGCGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTAc                                                                                <  1:401326/143‑1 (MQ=255)                                                     tctcCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTTCTCCAGCTTACCTTc                                                                            >  1:435281/1‑143 (MQ=255)                                                        gcGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCa                                                                         <  2:26218/142‑1 (MQ=255)                                                        ccGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCa                                                                         <  1:347560/143‑1 (MQ=255)                                                        ccGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCa                                                                         >  2:241579/1‑143 (MQ=255)                                                          gtgtgtAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGt                                                                       <  1:71415/143‑1 (MQ=255)                                                            gtgtAACAGGTAATACCAGGAGTGCCGGGGTTTGATATGTATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGTTGAGATACGGTAGTTTTTAACATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTaa                                                                     <  2:52092/143‑1 (MQ=255)                                                            gtgtAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTCCCTCCCCAGTaa                                                                     >  2:313671/1‑143 (MQ=255)                                                               tAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCAAGCTTACCGTCCCCGTAATag                                                                  >  1:652251/1‑143 (MQ=255)                                                                     gTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATagagagag                                                            <  1:226358/143‑1 (MQ=255)                                                                           gcaagaatacgaagtgcagatgattttaaaaactaccgtatctcaccagcaggcactgctggTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAgcg                                                      >  1:441430‑M2/63‑143 (MQ=255)                                                                              gAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAAGCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCg                                                   <  1:654998/143‑1 (MQ=255)                                                                               aaGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCgg                                                  <  1:175934/143‑1 (MQ=255)                                                                                  ttCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGAAGTTTGTAAAATCATCTGCACTTCGTATGCTTGCTCCAGCTTACCTTCCCAGTCATAGAAAGATGTAGCGCCgtgca                                               >  2:190150/1‑139 (MQ=255)                                                                                         tgcagatgattttaaaaactaccgtatctcaccagcaggcactgctggTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGt                                        >  1:506026‑M2/49‑143 (MQ=255)                                                                                          tttGATATGGATGATGAGACTTCCGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGGATTCTTGCTCCAGCTTACCTTCCCAGTACTAGAGAGAGGTAGCGCCGGGGATCAAGGTc                                       >  2:112091/1‑143 (MQ=255)                                                                                          tttAATATGGATGATGCGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTc                                       <  1:16539/143‑1 (MQ=255)                                                                                               tatGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCa                                  <  2:552761/143‑1 (MQ=255)                                                                                                 tGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCACCGGGGATCAAGGTCGCGCAgg                                >  2:555823/1‑143 (MQ=255)                                                                                                  ggATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGgc                               >  2:589989/1‑143 (MQ=255)                                                                                                   gatgatGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGAGCAGGGTCGCGCAGgcc                              >  1:539971/1‑143 (MQ=255)                                                                                                       atgaGACTTTAGGCATTCCAGCAGTGCCTGATAACTTCCTTCTTTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCa                          <  2:464613/143‑1 (MQ=255)                                                                                                        tgaGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGAGCAAGGTCGCGCAGGCCGCCAg                         >  2:582452/1‑143 (MQ=255)                                                                                                          agaCTTCAGGCATTCCAGCAGTGTCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGtt                       <  2:365747/143‑1 (MQ=255)                                                                                                              ttCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCACGCCGCCCGTTTTTc                   >  2:583512/1‑143 (MQ=255)                                                                                                                 aGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGc                >  2:510467/1‑143 (MQ=255)                                                                                                                   gCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTGCCGCCa              >  1:6638/1‑143 (MQ=255)                                                                                                                      ttCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCATCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCa           >  2:320080/1‑143 (MQ=255)                                                                                                                         cagcaggcactgctggTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTACTGCAGACGCACAGGGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCAAGCACtt        >  1:303064‑M2/17‑143 (MQ=255)                                                                                                                          AGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCACttt       >  2:324975‑M1/1‑143 (MQ=255)                                                                                                                           GCAGTGCCGGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCACTTTg      >  1:575357‑M1/1‑143 (MQ=255)                                                                                                                               tGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCCCTTTggcgg  >  2:269972/1‑143 (MQ=255)                                                                                                                                         |                                                                                                                                     AAAGTAGCAGGATCAGCGTAAAGATGCGTTGAGCCATGAGAGGTAATCTGTGTCTCCGTGTGTAACAGGTAAAACCAGAAGTTCCGGGGTTTGATATGGATGATGAGACTTCAGGCATTCCAGCAGTGCCTGCTGGTGAGATACGGTAGTTTTTAAAATCATCTGCACTTCGTATTCTTGCTCCAGCTTACCTTCCCAGTAATAGAGAGAGGTAGCGCCGGGGATCAAGGTCGCGCAGGCCGCCAGTTTTTCCGCCAGCACTTTGGCGG  >  NC_000913/4365006‑4365274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.