mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572411 | 835 (25.180) | 8 (0.250) | 6/250 | NT | 1.2% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 512 (16.310) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572405 = | 914 (27.560) | 8 (0.320) +31 bp |
5/202 | NT | 1.1% | coding (38/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 1095504 | NA (NA) | intergenic (‑67/‑40) | insE‑4/ymdE | IS3 element protein InsE/protein YmdE | |||||
| * | ? | NC_000913 | = 572325 | 1967 (59.310) | 25 (0.820) | 13/244 | NT | 1.3% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 1894 (61.830) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 571867 | 2407 (72.580) | 3 (0.090) | 3/254 | NT | 0.13% | coding (414/798 nt) | ybcM | DLP12 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 571943 | 2391 (74.960) | coding (490/798 nt) | ybcM | DLP12 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 570695 = | 2124 (64.050) | 33 (1.050) | 18/250 | NT | 1.7% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1838 (58.550) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 570639 | 2209 (66.610) | 6 (0.200) | 5/238 | NT | 0.29% | intergenic (+211/‑254) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570663 | 2093 (70.060) | intergenic (+235/‑230) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 2175 (65.580) | 9 (0.300) | 7/238 | NT | 0.44% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 2093 (70.060) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 569768 = | 2521 (76.020) | 5 (0.160) | 4/248 | NT | 0.22% | coding (867/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | 569802 = | 2173 (69.780) | coding (901/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | = 569159 | 2299 (69.320) | 46 (1.510) | 20/242 | NT | 2.1% | coding (258/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569161 | 2253 (74.160) | coding (260/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 568678 = | 2542 (76.650) | 14 (0.450) | 12/250 | NT | 0.58% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 2359 (75.150) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||