New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 566841	30 (0.630)	9 (0.260) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA	8/196	NT	23.5%	noncoding (65/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	49 (1.040)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

TGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566777‑566841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGC  <  NC_000913/572471‑572372                                                                  ||||||||||||||||||||||||||||||||||                                                                                                     TGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCCAAGA                                                          >  1:166917/1‑143                        CACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCT                                   >  2:782069/1‑143                             GGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGGTCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAA                              >  1:552958/1‑143                               CTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCTACTATTGCTGGGTAAGATGAGTTCAGGCTTCCAATCCGCACAGGTCAAACGATAGATGCAAAGAATAGCAGGGGACTTCATGTATCTGTGAAGG                            >  2:357973/1‑143                                    TGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAAAAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCGAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTAAAGGGAGAA                       >  2:894259/1‑143                                      AGTAAACTCTCAGTCAGAGATGACTCACTTAGACGCGTGTCCACTCTTGCTTGGTAAGAGCAGTTCACGCTTCCCCTCCGCAGAGGTCAACCGCTAGCTGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGA                     >  2:492897/1‑143                                                       AGGTGACTCACGTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGCACGCTTCCCCTCCGCAGAGGTCAAACGCGAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGT    <  2:278983/143‑1                                                         tTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGC  <  1:822676/142‑1                                                         tTGACTCACGTGGCCGCGTGTCCACTATTGCTGGGGAAGATCAGTTCACGCTGCCCCGCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGC  <  2:264003/142‑1                                                                  ||||||||||||||||||||||||||||||||||                                                                                                     TGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566777‑566841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGC  <  NC_000913/572471‑572372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.