| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 566841 | 30 (0.630) | 9 (0.260) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA |
8/196 | NT | 23.5% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 49 (1.040) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
GCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACA > NC_000913/566699‑566975 | gCAATTATTCATTACCTGGGGACGCATAAGCGCTTTTGAACAGATGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:890250/143‑1 (MQ=21) gattctgcATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 2:254827/136‑1 (MQ=255) attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCGCATg > 1:692175/1‑143 (MQ=255) ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAGTAGTGGATAAGCGTCAAAGAGAGTAAACACACAGTCAGAGGTGACTCACATGa > 1:127666/1‑143 (MQ=37) ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 1:717139/1‑143 (MQ=255) attCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 2:589440/1‑143 (MQ=255) agtgccTGGGGATGAATAAGGTCTTCTGCGCACAGGACGTTGCCGGGGTAACAGGCGCAACCGTAATCTGCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 2:647984/139‑1 (MQ=18) ttACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc < 1:201479/143‑1 (MQ=255) tGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGGAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt > 1:57415/1‑143 (MQ=255) ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGGGGACACGCGGCTAAGTGAGAACACTAACAGTCAGATGTGACTCCCATGACAAAAACAGTATc > 1:474835/1‑143 (MQ=25) cgaaTACGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa < 2:133347/140‑1 (MQ=255) cGCATAAGAGCGTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa < 1:934041/143‑1 (MQ=255) gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg > 2:599012/1‑143 (MQ=255) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTCCCTCACATGCCAACCACACTATCCACAAGTa > 1:647476/1‑143 (MQ=21) cttgcatgCACACGACGTTGCCGCCGCAACATGCCCAACCGTAATCTGATCTTACAGAGCAATAGTCAAAACGCGGCTAAGTGAGTAAACTCTCAGTCAGAAATTACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc < 2:714878/137‑1 (MQ=14) ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACAAGTAAAAAAccc > 1:834209/1‑143 (MQ=255) cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCg > 1:120538/1‑143 (MQ=255) gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 1:320909/143‑1 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa > 1:419674/1‑143 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGAGGCAAATTGAGCAAACTCTCAGTCAGAGGTGACTCACATAACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa > 2:668839/1‑143 (MQ=17) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAAGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCGCAGTCAGAGGTGAATCACATGGCAAACACAGTAACAAACAGCAACAAACACCGTAcaca > 2:476667/1‑143 (MQ=17) aGGACCTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc < 2:135484/143‑1 (MQ=255) aCGTTGCCCGGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGGCAGAGGTGACGCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAtt < 2:594151/143‑1 (MQ=14) ttGCCGCGGTAACAGGCGCAACCTGAAGCGGATCTTACCCAGCAATAGTGGACTCGCGGCTAAGTGAGTAAACCGTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 2:241974/143‑1 (MQ=14) ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 2:244039/143‑1 (MQ=255) ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 2:320571/143‑1 (MQ=255) cgcgGTAACAGGCGCAAGCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGGGGTGACGAAGATGACAAAAACAGTATCAACCAGTAGGAAACAGCGTCAACAGCATTGGGCTGa > 2:731573/1‑143 (MQ=14) aaCAGGCGCAACCGTAATCTGATCTTGCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 1:642953/143‑1 (MQ=255) aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTAAGAGTTTACTCAGATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 1:592158/143‑1 (MQ=14) aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 1:264672/143‑1 (MQ=40) aaCAGGCGCAACCGTAATCTGATCTAACCTAGTAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCCACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 1:251569/143‑1 (MQ=255) aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc > 1:305913/1‑143 (MQ=39) cAGGCGCAACCGGAAGCGGAGCGTAGCGAGCAGTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAGCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 2:929865/143‑1 (MQ=11) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg < 2:400170/143‑1 (MQ=35) tcatccGTAATGTGATCTTACCCAGCAATAGTGGACACGCGGCGAAGTGAGTAAGTTCTCAGTCAGAGGTGACTCACATGACAAATACAGTATCAACCAGGAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa < 2:316392/139‑1 (MQ=11) tGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgccaaga > 1:166917‑M1/1‑65 (MQ=255) cacGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatct > 2:782069‑M1/1‑42 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaaggtcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaa > 1:552958‑M1/1‑37 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtctactattgctgggtaagatgagttcaggcttccaatccgcacaggtcaaacgatagatgcaaagaatagcaggggacttcatgtatctgtgaagg > 2:357973‑M1/1‑35 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagaaaagttcacgcttcccctccgcagaggtcaaacgcgagatgcaaagaattgcaggtgcatttctgcatctgtaaagggagaa > 2:894259‑M1/1‑30 (MQ=255) aGTAAACTCTCAGTCAGAGATGACTCACttagacgcgtgtccactcttgcttggtaagagcagttcacgcttcccctccgcagaggtcaaccgctagctgcaaagaattgcaggtgcatttctgcatctgtgaagggagaaga > 2:492897‑M1/1‑28 (MQ=255) agGTGACTCACgtagccgcgtgtccactattgctgggtaagatcagtgcacgcttcccctccgcagaggtcaaacgcgagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgt < 2:278983‑M1/143‑133 (MQ=255) ttgACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc < 1:822676‑M1/142‑135 (MQ=255) ttgACTCACgtggccgcgtgtccactattgctggggaagatcagttcacgctgccccgccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc < 2:264003‑M1/142‑135 (MQ=255) | GCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACA > NC_000913/566699‑566975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |