New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1744848	55 (1.160)	4 (0.090)	4/244	NT	7.1%	intergenic (+18/+23)	mdtK/ydhQ	multidrug efflux pump MdtK/adhesin‑like autotransporter YdhQ
	?	NC_000913	= 1744854	54 (1.240)					intergenic (+24/+17)	mdtK/ydhQ	multidrug efflux pump MdtK/adhesin‑like autotransporter YdhQ

CCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1744699‑1744848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgcaaccCGTGAAGGTTGCGCCTTGTCTTTATTAGCGGGATGCTCGTTGCAGAATGATGGCTGACGGCAGACGTTGCAGGAACCGCATACGCAACATCATCATAATGGCTGCCGACGTCAGGCCAATAATAAAGCCTATCCAGAAGCCT  <  NC_000913/1744854‑1744713                                                                                                                                                                                                                                                                                                      CCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTCATAAAGCCAAGG                                                                                                                                                       >  2:124106/1‑143  CTATGGGGCCAGCAAGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCCGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGa                                                                                                                                                      >  1:277923/1‑142   TATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTGATGAAGACAAGGCG                                                                                                                                                     >  2:37215/1‑143                    TCTGGATAGTCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCCGTGAAGGTTGC                                                                                                                                    <  1:774612/143‑1                          cAGGCTTTAGTCTTGGCCTGACGTCGGCAGCCATTGTGATGATGTTGCGTATGCGTTTCCTGCCACGCCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCCGTGAAGGTTGCGCCTTG                                                                                                                              <  2:221518/142‑1                                              ACGTCGCGAGCCGTTAGGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATGCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCCGTGAAGGTTGCGCCTTGTCTTTATTAGCGGGATGCTC                                                                                                          <  2:424948/143‑1                                                  CGGCAGCCGTTATGATGATGGTGCGTATGCGGGTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTATTAAAGACAAGGCGCAACCCGTGAAGGTTGCGCCTTGTCTTTATTAGCGGGATGCTCGTTG                                                                                                      <  1:442281/143‑1                                                                                                                                              GGCGCAACCTGGAACGGTTGCGCCTTCACTTTATCAGCAGCATGCCCGTTTCATAATGATGGCTGACGGCAGACGTTGCAGGAACTGCATACGCAACAACATCATAATGGCTGCCGACGTCAGGCCAATAATAAAGCCTATCC          <  2:393708/143‑1                                                                                                                                                  CAACCCGTGAAGGTCGCGCCGTGTCTTTATTAGCGGGATGCTCGTTGCAGAATGATGGCTGACGGCAGACGTTGCAGGAACCGCATACGCAACATCAGCATAATGGCTGCCGACGTCAGGCCAATAATAAAGCCTATCCAGAA      <  2:361525/143‑1                                                                                                                                                      CCGTGAAGGTTGCGCCTTGTCTTTATTAGCGGGATGCTCGTTGCAGAATGATGGCTGACGGCAGACGTTGCAGGAACCGCATACGCAACATCATCAGCATGGCTGCCGACCTCAGGCCCATAGTACAGCCTATCGAGAAGCCg  >  2:878468/1‑142                                                                                                                                                                                                                                                                                                      CCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1744699‑1744848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgcaaccCGTGAAGGTTGCGCCTTGTCTTTATTAGCGGGATGCTCGTTGCAGAATGATGGCTGACGGCAGACGTTGCAGGAACCGCATACGCAACATCATCATAATGGCTGCCGACGTCAGGCCAATAATAAAGCCTATCCAGAAGCCT  <  NC_000913/1744854‑1744713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.