New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3114511	NA (NA)	3 (0.070)	3/250	NT	NA	intergenic (‑159/+39)	pppA/yghJ	prepilin peptidase/putative lipoprotein YghJ
	?	NC_000913	= 3114541	NA (NA)					noncoding (29/34 nt)	other	REP219c

TGTAACTTGCTGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3114370‑3114511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCGATTATTTGCGCTGGCAGACACCCGTAGGACGGATAAGGCGTTT  <  NC_000913/3114541‑3114393                                                                                                                                                                                                                                                                                                     TGTAACTTGGCGGATGCGGCGTAAACCGCTTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATG                                                                                                                                                      <  1:230495/143‑1    AACTTGCTGGATGCGGCGTAACACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCG                                                                                                                                                   <  2:592869/143‑1     tCTTGCTGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTGCCCCGTCTGTAGGCCCAATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGG                                                                                                                                                  <  2:638980/142‑1                                TATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCAT                                                                                                                       <  1:234080/143‑1                                                                                          CCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCG                                                                                                                           >  1:97204/1‑81                                                                                          CCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCG                                                                                                                           <  2:97204/81‑1                                                                                                                                           gtggGCCGGATAAGGCGCTCGCGCCGCATCCGGGATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCGATTATTTGCGCTGGCAGACACCCGTAGGACGGA            <  1:880079/139‑1                                                                                                                                                 CGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCGATCATCTGCGCTGGCAGACACCCGTAGGACCGATCAGGC      >  1:249923/1‑143                                                                                                                                                    ATAACGCGCTCGCGCCGCAGCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTCCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCGATTATTTGCGCTGGCAGACACCCGTAGGACGGATAAGGCGTT   <  2:480749/143‑1                                                                                                                                                     TAAGGCGCTCGGGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCGATTATTTGCGCTGGCAGACACCCGTAGGACGGATAAGGCGTTT  <  2:616831/143‑1                                                                                                                                                                                                                                                                                                     TGTAACTTGCTGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3114370‑3114511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCGATTATTTGCGCTGGCAGACACCCGTAGGACGGATAAGGCGTTT  <  NC_000913/3114541‑3114393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.