New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3114511	NA (NA)	3 (0.070)	3/250	NT	NA	intergenic (‑159/+39)	pppA/yghJ	prepilin peptidase/putative lipoprotein YghJ
	?	NC_000913	= 3114541	NA (NA)					noncoding (29/34 nt)	other	REP219c

TTGTAACTTGCTGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTGG  >  NC_000913/3114369‑3114652                                                                                                                                                |                                                                                                                                              ttgcAACTTGCTGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCAt                                                                                                                                               <  1:225303/143‑1 (MQ=255)  tGTAACTTGGCGGATGCGGCGTAAACCGCTTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATg                                                                                                                                              <  1:230495‑M1/143‑2 (MQ=255)     aaCTTGCTGGATGCGGCGTAACACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccg                                                                                                                                           <  2:592869‑M1/143‑5 (MQ=255)      tctTGCTGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTGCCCCGTCTGTAGGCCCAATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccgg                                                                                                                                          <  2:638980‑M1/142‑6 (MQ=255)            tGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATgcgg                                                                                                                                    >  1:110990/1‑143 (MQ=255)             agATGGGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATgcggc                                                                                                                                   <  1:577504/142‑1 (MQ=255)                tGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCGGCGCAAATAATCGCGGCTTTCCCCGTTGGTGGGCCCGATAAG‑CAGGCGCATCCGGCAAATGTGTTACCCCGGTGCGCCTCATTTCCTGACGGATGCGGcgcg                                                                                                                                >  2:618067/1‑143 (MQ=255)                   ggcgTAAAACGCCTTATCCGTCATACGCGAGGCGGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTCCCTGCCGGATGCGGCGCGAgc                                                                                                                             >  2:826086/1‑143 (MQ=255)                    gcgTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATAGCGGCTTTCCCCGTCTGTAGGCCCGGTAAG‑CCGGCGCATCGGGCACACGTGTTAACCCGGTCCGCCTTATTCCACGCCGGCTGCGGAGCGAccg                                                                                                                            >  2:155063/1‑143 (MQ=255)                    gcgTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCACAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAgcg                                                                                                                            >  1:288673/1‑143 (MQ=255)                     cgTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATACGACAAAAGTAT‑ATTTATAGTTGTTAACCCGGTGCGCCTTATTCCATGCCGGCGGCGGCGCGAgcga                                                                                                                           >  1:214212/1‑142 (MQ=255)                     cgTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGAGAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAgcgc                                                                                                                           <  1:374214/143‑1 (MQ=255)                         aaaCGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCCCGAGCGCCTTA                                                                                                                       <  2:616831‑M2/143‑1 (MQ=255)                          aaCGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGGAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGCTGCGGCGCGAGCGCGTTAT                                                                                                                      <  2:480749‑M2/143‑1 (MQ=255)                             gCCTGATCGGTCCTACGGGTGTCTGCCAGCGCAGATGATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCG                                                                                                                   >  1:249923‑M2/1‑143 (MQ=255)                                 tATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggataaggcgctcgcgccgcatccggcat                                                                                                               <  1:234080‑M1/143‑33 (MQ=255)                                   tCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATCCCGGATGCGGCGCGAGCGCCTTATCCGGCccac                                                                                                             <  1:880079‑M2/143‑5 (MQ=255)                                   tCCGTCCTACGGATGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCCAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATCCGGCGCGAGCGCCTTACCCGGCCtgc                                                                                                             >  1:180881/1‑141 (MQ=255)                                    ccGTCCTGCGGGTGTCTGCCCGCGCTAATACTCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACg                                                                                                            <  2:5816/143‑1 (MQ=255)                                     cGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACgg                                                                                                           <  1:199300/143‑1 (MQ=255)                                       cccTGCGGGTGTCTGCCAGCGGAAATAATCGCGGCGTTCCCCGTGTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGc                                                                                                         <  2:129112/142‑1 (MQ=255)                                         ctccGGGTGTCTGCCAGCGCAAATAGTCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCtt                                                                                                       <  1:672077/140‑1 (MQ=255)                                          tACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGCGCGCCTTATCCGGCCTACGGGCTTa                                                                                                      >  1:225096/1‑143 (MQ=255)                                           aCGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTAc                                                                                                     >  1:677701/1‑143 (MQ=255)                                             gggTGTCGGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTc                                                                                                   <  1:274144/143‑1 (MQ=255)                                               gtgtCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGCCCAGCTCCG‑ATGGTAGTGCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCgg                                                                                                 <  1:213782/143‑1 (MQ=37)                                                   cgaccAGCTTAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGa                                                                                             <  2:806036/140‑1 (MQ=255)                                                       cAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATc                                                                                         <  2:629840/143‑1 (MQ=255)                                                             aaaTAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGTAGACGTCTTATGc                                                                                   >  1:62447/1‑143 (MQ=255)                                                              aataatCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTACCCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCt                                                                                  <  2:783215/143‑1 (MQ=255)                                                              aataatCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTAGTCGGCAGACCTCTTATGcc                                                                                  >  2:766442/1‑142 (MQ=255)                                                                   tCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGGGCCTTATCCGGCCTACGGGCTTACTCGGCGGGCATCTTCTGCTCGGTa                                                                             >  1:600612/1‑143 (MQ=255)                                                                   tCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACACCTTATGCTCGGtg                                                                             >  2:364281/1‑142 (MQ=255)                                                                    cgcgGCTTGCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTaa                                                                            <  2:727576/143‑1 (MQ=255)                                                                     gcgGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATCCGGCGCGCCCGCCTTATCCCGCCCACGGGCTTCCTCTGCAGACGTCCTCTGCTCgctcac                                                                           >  1:907765/1‑138 (MQ=255)                                                                              cccGGCTGTAGCCCCGGTGAG‑CAGGCGCATCGGGCAAATGTGTTATCCCGGTGCGCCTTATTTCGTGCCGGATGCGGCGCGAGCGCCTTATCCGGTCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAAt                                                                  <  2:713192/143‑1 (MQ=38)                                                                                   cTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGCCAGACATCTTATGCTCGGTAACCTGATTGATGGttt                                                             >  2:848390/1‑143 (MQ=255)                                                                                    tGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTc                                                            <  1:489817/143‑1 (MQ=255)                                                                                      tAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTACCCGGCCTACGGGCTTACTCGGAAGACATCTTATGCTCGGTAACCTGATTCATGGTTTCCg                                                          >  2:502778/1‑143 (MQ=255)                                                                                        ggCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGt                                                        <  1:778666/143‑1 (MQ=255)                                                                                         gCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGGGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTc                                                       <  2:426442/143‑1 (MQ=255)                                                                                          cccGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTCTTTCATGCCGGATGCGGCGCGAGCGCCTTCTCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTCATGGTCTCCAGTcc                                                      >  2:76844/1‑143 (MQ=39)                                                                                           ccGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggataaggcgctcgcgccgcatccg                                                                                                                   <  2:97204‑M1/81‑29 (MQ=255)                                                                                           ccGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggataaggcgctcgcgccgcatccg                                                                                                                   >  1:97204‑M1/1‑53 (MQ=255)                                                                                                aaG‑CAGGCGCACCGGGCAAATGTGTTAACCCGGTGCGCCCTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTGCGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTc                                                <  1:566562/143‑1 (MQ=255)                                                                                                 aG‑CGGGCGCATCGGGCAAATGTGTTCACCCGGTCCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTcc                                               <  2:543733/143‑1 (MQ=255)                                                                                                  g‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTGATGTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCg                                              <  2:571086/143‑1 (MQ=255)                                                                                                    cAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCgc                                             >  2:883519/1‑142 (MQ=255)                                                                                                    cAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACACCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCGCGTTCCgg                                             >  2:540134/1‑143 (MQ=255)                                                                                                     aGGCGCATCGGGCAGATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGt                                            <  2:67492/143‑1 (MQ=255)                                                                                                      ggCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTCCCGGtt                                           >  1:73316/1‑143 (MQ=255)                                                                                                       gcgcATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGGTTAATGGTTTCCCGCCCCTGCTCCGGtct                                          >  1:919082/1‑141 (MQ=255)                                                                                                           aTCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGc                                      >  2:383196/1‑143 (MQ=255)                                                                                                               ggCAAATGTGTTCACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCt                                                                                        <  1:493074/89‑1 (MQ=255)                                                                                                               ggCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCt                                                                                        >  2:493074/1‑89 (MQ=255)                                                                                                                  aaaTGTGTTAACCATGTGCGCCGGAGTTCAGGCCGGAGGCGGCGCGAGCGCCTTATCCGTCCTACGTGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCTGTCCCTGTTCCTGTTTCGGCAGATCGa                               <  1:242345/143‑1 (MQ=255)                                                                                                                      gtgtTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGa                           <  1:626452/143‑1 (MQ=255)                                                                                                                       tgtTCACCCGGTGCGCCTTATTTCATGCCGTATGCGCCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGAc                          <  2:893148/143‑1 (MQ=255)                                                                                                                        gtTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTGCTCGGCAGGCATCTTGTGGTCGGTAACCTGATTAATGGTTTGCGGTCCCTGTTCCGGTTTCGGGAGGTCGGGTGAcg                         >  1:722529/1‑143 (MQ=38)                                                                                                                        gtTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGACCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCCTATGCTCGGGAACCTGATTAATAGTTTCCGGTCCCTGCTCCGGCTACGGCAGATCGAgcggcg                         >  2:648865/1‑138 (MQ=38)                                                                                                                         ttAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGAcgc                        >  2:602116/1‑143 (MQ=255)                                                                                                                           aaCCCGGTGCGCCTTATTTCACGCCGGAGGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGa                      <  2:40142/143‑1 (MQ=255)                                                                                                                                            ttCGTGCGGGATGGCGCTCGCGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAAGGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGAc     <  2:557755/143‑1 (MQ=255)                                                                                                                                             tCATTCCGGATGCGGGTTGAGTGCCTTATCCGGCCTCCTGGCTTACTCGGCTGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTGCGCTCTTGGTGGATCGATAGACTCGAGCGTGTTGTAAGCCGACt    <  2:289857/143‑1 (MQ=255)                                                                                                                                               aTGCCGGATGCGGCGCGAGCGCCTTATCCGGCatgaaataaggcgcaccgggttaacacatttgcccgatgcgcctgcttatcgggcctacagacggggaaagccgcgattatttgcgctggcagacacccgtaggacggata  <  1:234080‑M2/143‑112 (MQ=255)                                                                                                                                               aTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTgg  >  1:111609/1‑143 (MQ=255)                                                                                                                                                |                                                                                                                                              TTGTAACTTGCTGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAG‑CAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGCTTACTCGGCAGACATCTTATGCTCGGTAACCTGATTAATGGTTTCCGGTCCCTGTTCCGGTTTCGGCAGATCGAGTGACGCGAGCGTGTTGTAAGCCGACTGG  >  NC_000913/3114369‑3114652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.