New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	958761 =	42 (0.890)	3 (0.070)	3/248	NT	7.6%	intergenic (+20/‑51)	serC/aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_000913	958782 =	34 (0.770)					intergenic (+41/‑30)	serC/aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase

TGCACTGAAAGGTCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGC  >  NC_000913/958621‑958902                                                                                                                                             |                                                                                                                                              tGCACTGAAAGGTCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATccc                                                                                                                                             >  1:554706/1‑143 (MQ=255) ccgtgtgctcatgccgcgagcaataaagcgcggttagaaacgctcttggaaccgggcagattaatagtgccatcgacacgagcgatgggttgtaacgtcagggattccatgaactcaactctctacaacagaaataaaaaccc                                                                                                                                             >  2:590899‑M1/141‑143 (MQ=255)  gtaCTGAAAGGGTATCGTGTTGTCGGCGGAATGCGCGCTTCTATTTATAACGCGATGCCGCTGGAAGGCGTCAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCAAAGTTAACACCGAAATTTTGCTTAATcccc                                                                                                                                            <  2:336032/141‑1 (MQ=255)  gCACTGAAAGGTCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTACTGCCGAAATTTTGCTTCATcccc                                                                                                                                            >  1:721594/1‑143 (MQ=255)  gCACTGAAAGGTCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCAGCACGGTTAATGCCGAAATATTGATTTATctca                                                                                                                                            >  2:364022/1‑140 (MQ=255)  gCACTGAAAGGTCACAGTGTGGTCGGCGGAATGCTCGCTACTAATTATAACGCCATGCCGCTGAAAGGCGTTGAAGCGCTGACCGACTTCATGGTTGAGTTCGAACGCCGTCGCGCTGAATGCCGCAATTTTTCTTTATcccc                                                                                                                                            >  2:793574/1‑143 (MQ=255)  cgtgtgctaatgccgccagcaataaagcgcggttagaaacgctcttggaaccgggcagattaatagtgccatcgacacgagcgatgggttgtaacgtcagggcttccatgaactcaactctctacaacagaaataaaaacccc                                                                                                                                            <  1:860470‑M1/4‑1 (MQ=255)    tgtgctaatgccgccagcaataaagcgcggttagaaacgctcttggaaccgggcagattactagtgccatcgacacgcgcgatgggttgtaccgtcagggatcccatgaacccaactctcttcaacagacataaaacccccca                                                                                                                                          <  2:370434‑M1/6‑3 (MQ=255)    tgtgctaatgccgccagcaataaagcgcggttagaaacgctcttggaaccgggcagattaatagtgccatcgacacgagcgatgggttgtaacgtcagggattccatgaactcaactctctacaacagaaataaaaaCCCcac                                                                                                                                          >  1:481610‑M1/138‑143 (MQ=255)     gtgctaatgccgccagcaataaagcgcggttagaaacgctcttggaaccgggcagattaatagtgccatcgacacgagcgatgggttgtaacgtcagggattccatgaactcaactctctacaacagaaataaaaaCCCcaca                                                                                                                                         <  2:359165‑M1/7‑1 (MQ=255)        aaaGGTCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGCAGTTTTGCTTAATCCCCAcagcc                                                                                                                                      >  2:736650/1‑143 (MQ=255)          aGGTCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCAcagccag                                                                                                                                    >  1:332908/1‑143 (MQ=255)             tCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCt                                                                                                                                 >  1:502896/1‑143 (MQ=255)                ccGTGTGGTCGGCGGAATGCGCTCTGCGATTTATAACGCCATGCCGCTGGGATGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCtgtg                                                                                                                              <  2:666237/143‑1 (MQ=255)                ccGGGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGCGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCtgtg                                                                                                                              <  2:639939/143‑1 (MQ=255)                  gtttgGGCGGCGGAATGCGCTCTTCTAGTGATAGCGCCATGCCGCTGGAAGGCGTTGACGCGCTGACAGACTTCGTGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGGCTGGCTGTggg                                                                                                                            <  2:507472/140‑1 (MQ=255)                  gtgtGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCG‑AATTTTGCTTAATCCCCACAGCCAGCCTGTgggg                                                                                                                           <  1:443365/143‑1 (MQ=255)                   cgcaataaagcgcggttagaaacgctcttggacccgggcagattaatagtgccatcgacacgagcgatgggttgtaacgtcagggattccatgaactcaactctctacaacagaaataaaaaCCCCACAGCCAGCCTGTgggg                                                                                                                           >  1:418429‑M1/123‑143 (MQ=255)                     tgGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGtt                                                                                                                         <  1:375865/143‑1 (MQ=255)                     tgGGCGGCGGAATGCGCGCTGCTATGTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACGTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGtt                                                                                                                         <  1:895835/143‑1 (MQ=255)                       gTCGGCTGAGTGGGCGCGTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGtttt                                                                                                                       <  1:208795/143‑1 (MQ=255)                         cggcgtAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTa                                                                                                                     <  1:457676/143‑1 (MQ=255)                           gcggAATGCGCGTTGCGATTTATAACGCCGTGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTAtt                                                                                                                   <  2:13351/143‑1 (MQ=255)                                aTGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCtgt                                                                                                              <  1:28077/143‑1 (MQ=255)                                aTGCGCGCTGCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCAGGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCtgt                                                                                                              <  2:511608/143‑1 (MQ=255)                                    gcgcTTCTATTTATAACGCCATGCCGCTGGAAGGCGCTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCCGTGGGGCTTTTCTTTCTGTTGTa                                                                                                          >  1:606824/1‑143 (MQ=255)                                         tCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTagagag                                                                                                     >  1:782082/1‑143 (MQ=255)                                         tCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGAGGGGTTTTTATTTCTGTTGTagagcg                                                                                                     >  1:107484/1‑141 (MQ=255)                                         tCTATTTATAACGCCATGCCGCTGGAACGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGCTTAATGCCGAAATTTTGCTTAATCCCCCCAGCCAGCCTGTGGGGGCCTTATCTCTACTGTagagag                                                                                                     >  2:501966/1‑143 (MQ=255)                                           tATTTATCACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAgagtt                                                                                                   <  1:215862/143‑1 (MQ=255)                                            aTTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTGGAgagttg                                                                                                  >  1:503831/1‑143 (MQ=255)                                                   aCGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCAt                                                                                           >  1:488414/1‑143 (MQ=255)                                                    cGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATg                                                                                          <  1:461890/143‑1 (MQ=255)                                                         tGCCGCTGGACGGCGTTAAAGCGCTGACAGACCTCATGGCTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATc                                                                                     <  1:651819/143‑1 (MQ=255)                                                          gCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAAGGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGCTTTTATTTCTGTTGTAGAGAGTCGAGTTCATGGAATcc                                                                                    >  2:424920/1‑143 (MQ=255)                                                            cGCTGGAAGGCGTTAAAGCGCTGACAGACTACATGGTTGAGTTTGAGGGCCGTCACGGGTAATGCCGAAAGTTTGCTTGATGCCCACAGCCAGCCTGTGGGGGTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATcctg                                                                                  >  2:332696/1‑141 (MQ=255)                                                             gCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCAAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCCGCCTGTGGGGTTTTTATTTCTGGTGGCGATAGTTGGGTGCATGGCATCCGTg                                                                                 >  1:236197/1‑143 (MQ=255)                                                              taatagtgccatcgacacgagcgatgggttgtaacgtcagggattccatgaactcaactctctacaacagaaataaaaaCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGa                                                                                >  1:457111‑M1/80‑143 (MQ=255)                                                              cTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGa                                                                                <  1:453465/143‑1 (MQ=255)                                                                ggAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACg                                                                              <  2:220403/143‑1 (MQ=255)                                                                   agccGTTCAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTa                                                                           <  1:444258/140‑1 (MQ=255)                                                                            aGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCCCGGTTCATGCCGACCTTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTATTACTTACCAGAGGAGATGGTTGTGTTTAGGAAACCCCTGACGTTACAACCAATc                                                                  >  1:347701/1‑143 (MQ=255)                                                                             gcgcTTACAGAGTCCATGGGTGTGTGCGAACGCCGTCACGGGTAGTGCGGGAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCg                                                                 <  2:612925/143‑1 (MQ=255)                                                                                        cTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGAt                                                      <  1:594576/143‑1 (MQ=255)                                                                                                    gTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAAt                                          >  1:837721/1‑143 (MQ=255)                                                                                                     ttCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGATTTTATTTCTGTTGTAGAGAGTTGCGTTCATGGAATCACTGACGTTACACCCCATCGCTCGTGTCGCTGGCACTAttcctc                                         >  1:253750/1‑139 (MQ=255)                                                                                                       cGAGCGCCGTCACGGTTAATGCCGAAATTTTGCTTAGTCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTGCAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTg                                       <  2:177942/143‑1 (MQ=255)                                                                                                            gCCGTCACGGTTAATGCCCAAAGTTTGTTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCgg                                  <  1:632768/143‑1 (MQ=255)                                                                                                            catgaactcaactctctacaacagaaataaaaaCCCCACAGCCAGCCTGTGGGGTTTTTATTTGTGTTGGAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTCATCTGCCCgg                                  <  1:845620‑M1/110‑1 (MQ=255)                                                                                                                 cACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTCGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTCATCTGCCCGGTTCCa                             <  1:262794/143‑1 (MQ=255)                                                                                                                          tGCCGAAATTTTGCTGAATCCCCACGGCCACGCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCATTATTAATCTGCCCGGTTCCAAGAGCGttt                    <  2:86113/143‑1 (MQ=255)                                                                                                                            ccGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTCTTTATTTCTGTTGTGGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGGGGTTCt                  >  1:379126/1‑143 (MQ=255)                                                                                                                            ccGAAATGTTGCTTAATCCCCAGAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCt                  <  1:750748/143‑1 (MQ=255)                                                                                                                              gAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTaa                >  1:291247/1‑143 (MQ=255)                                                                                                                                      gCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACCATTAAACTGCCCGGTTCCAAGACCGTTCCTAACCGCGCtt        >  2:612161/1‑143 (MQ=255)                                                                                                                                        ttAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGCGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGATTACAAGAGAGTCTCTAACCCCGCtttc      >  2:802941/1‑142 (MQ=255)                                                                                                                                            tCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGCGTCGAGTTCATGGAATCCCTGACGTTACCACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAAGGAATCTCACCGCGCTTTATTGc  >  2:609719/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                              TGCACTGAAAGGTCACCGTGTGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGC  >  NC_000913/958621‑958902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.