New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	958761 =	42 (0.890)	3 (0.070)	3/248	NT	7.6%	intergenic (+20/‑51)	serC/aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_000913	958782 =	34 (0.770)					intergenic (+41/‑30)	serC/aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase

TGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGG  >  NC_000913/958641‑958921                                                                                                                                              |                                                                                                                                            tgGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGtt                                                                                                                                            <  1:375865/143‑1 (MQ=255) tgGGCGGCGGAATGCGCGCTGCTATGTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACGTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGtt                                                                                                                                            <  1:895835/143‑1 (MQ=255)   gTCGGCTGAGTGGGCGCGTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGtttt                                                                                                                                          <  1:208795/143‑1 (MQ=255)     cggcgtAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTa                                                                                                                                        <  1:457676/143‑1 (MQ=255)       gcggAATGCGCGTTGCGATTTATAACGCCGTGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTAtt                                                                                                                                      <  2:13351/143‑1 (MQ=255)            aTGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCtgt                                                                                                                                 <  1:28077/143‑1 (MQ=255)            aTGCGCGCTGCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCAGGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCtgt                                                                                                                                 <  2:511608/143‑1 (MQ=255)                gcgcTTCTATTTATAACGCCATGCCGCTGGAAGGCGCTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCCGTGGGGCTTTTCTTTCTGTTGTa                                                                                                                             >  1:606824/1‑143 (MQ=255)                     tCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTagagag                                                                                                                        >  1:782082/1‑143 (MQ=255)                     tCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGAGGGGTTTTTATTTCTGTTGTagagcg                                                                                                                        >  1:107484/1‑141 (MQ=255)                     tCTATTTATAACGCCATGCCGCTGGAACGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGCTTAATGCCGAAATTTTGCTTAATCCCCCCAGCCAGCCTGTGGGGGCCTTATCTCTACTGTagagag                                                                                                                        >  2:501966/1‑143 (MQ=255)                       tATTTATCACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAgagtt                                                                                                                      <  1:215862/143‑1 (MQ=255)                        aTTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTGGAgagttg                                                                                                                     >  1:503831/1‑143 (MQ=255)                               aCGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCAt                                                                                                              >  1:488414/1‑143 (MQ=255)                                ccgggcagatgaatagtgccatcgacacgagcgatgggttgtaacgtcagggattccatgaactcaactctctccaacacaaataaaaaccccacaggctggctgtggggTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATg                                                                                                             <  1:845620‑M2/33‑1 (MQ=255)                                cGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATg                                                                                                             <  1:461890/143‑1 (MQ=255)                                     tGCCGCTGGACGGCGTTAAAGCGCTGACAGACCTCATGGCTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATc                                                                                                        <  1:651819/143‑1 (MQ=255)                                      gCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAAGGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGCTTTTATTTCTGTTGTAGAGAGTCGAGTTCATGGAATcc                                                                                                       >  2:424920/1‑143 (MQ=255)                                        cGCTGGAAGGCGTTAAAGCGCTGACAGACTACATGGTTGAGTTTGAGGGCCGTCACGGGTAATGCCGAAAGTTTGCTTGATGCCCACAGCCAGCCTGTGGGGGTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATcctg                                                                                                     >  2:332696/1‑141 (MQ=255)                                         gCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCAAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCCGCCTGTGGGGTTTTTATTTCTGGTGGCGATAGTTGGGTGCATGGCATCCGTg                                                                                                    >  1:236197/1‑143 (MQ=255)                                          taatagtgccatcgacacgagcgatgggttgtaacgtcagggattccatgaactcaactctctacaacagaaataaaaaCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGa                                                                                                   >  1:457111‑M1/80‑143 (MQ=255)                                          cTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGa                                                                                                   <  1:453465/143‑1 (MQ=255)                                            ggAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACg                                                                                                 <  2:220403/143‑1 (MQ=255)                                               agccGTTCAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTa                                                                                              <  1:444258/140‑1 (MQ=255)                                                        aGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCCCGGTTCATGCCGACCTTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTATTACTTACCAGAGGAGATGGTTGTGTTTAGGAAACCCCTGACGTTACAACCAATc                                                                                     >  1:347701/1‑143 (MQ=255)                                                         gcgcTTACAGAGTCCATGGGTGTGTGCGAACGCCGTCACGGGTAGTGCGGGAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCg                                                                                    <  2:612925/143‑1 (MQ=255)                                                                    cTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGAt                                                                         <  1:594576/143‑1 (MQ=255)                                                                              tcagggattccatgaactcaactctctacaacagaaataaaaaccccacaggctggctgtggggTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTa                                                               >  1:457111‑M2/65‑143 (MQ=255)                                                                                gTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAAt                                                             >  1:837721/1‑143 (MQ=255)                                                                                 ttCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGATTTTATTTCTGTTGTAGAGAGTTGCGTTCATGGAATCACTGACGTTACACCCCATCGCTCGTGTCGCTGGCACTAttcctc                                                            >  1:253750/1‑139 (MQ=255)                                                                                   cGAGCGCCGTCACGGTTAATGCCGAAATTTTGCTTAGTCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTGCAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTg                                                          <  2:177942/143‑1 (MQ=255)                                                                                        gCCGTCACGGTTAATGCCCAAAGTTTGTTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCgg                                                     <  1:632768/143‑1 (MQ=255)                                                                                        catgaactcaactctctacaacagaaataaaaaCCCCACAGCCAGCCTGTGGGGTTTTTATTTGTGTTGGAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTCATCTGCCCgg                                                     <  1:845620‑M1/110‑1 (MQ=255)                                                                                             cACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTCGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTCATCTGCCCGGTTCCa                                                <  1:262794/143‑1 (MQ=255)                                                                                                      tGCCGAAATTTTGCTGAATCCCCACGGCCACGCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCATTATTAATCTGCCCGGTTCCAAGAGCGttt                                       <  2:86113/143‑1 (MQ=255)                                                                                                        ccGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTCTTTATTTCTGTTGTGGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGGGGTTCt                                     >  1:379126/1‑143 (MQ=255)                                                                                                        ccGAAATGTTGCTTAATCCCCAGAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCt                                     <  1:750748/143‑1 (MQ=255)                                                                                                          gAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTaa                                   >  1:291247/1‑143 (MQ=255)                                                                                                                  gCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACCATTAAACTGCCCGGTTCCAAGACCGTTCCTAACCGCGCtt                           >  2:612161/1‑143 (MQ=255)                                                                                                                    ttAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGCGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGATTACAAGAGAGTCTCTAACCCCGCtttc                         >  2:802941/1‑142 (MQ=255)                                                                                                                        tCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGCGTCGAGTTCATGGAATCCCTGACGTTACCACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAAGGAATCTCACCGCGCTTTATTGc                     >  2:609719/1‑143 (MQ=255)                                                                                                                         ccccacaggctggctgtggggTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGGTCCAAGAGCGTTTCTAACCGCGCTTTATTgcg                    >  1:418429‑M2/22‑142 (MQ=255)                                                                                                                          CCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTg                   <  2:288456‑M1/143‑1 (MQ=255)                                                                                                                            CACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACAGCGCTTTATTGCTggc                 >  1:624052‑M1/1‑143 (MQ=255)                                                                                                                             ACAGCCAGCCTGTGGGGTTTTTATTTCCGTTGTAGGGAGTTGAGGGCATGGAATCCCCGACGTTACAGCCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTggcg                >  1:282525‑M1/1‑143 (MQ=255)                                                                                                                              CAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTggcgg               >  2:299825‑M1/1‑143 (MQ=255)                                                                                                                                       tgtggggTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGcac      <  2:359165‑M2/136‑1 (MQ=255)                                                                                                                                        tgggggGTTTTATGTCTGTTGAAGAGAGTTGGGTTCATGGGATCCCTGACGGTACAACCCATCGCGCGTGTCGATGGCACTAGTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGcaca     <  2:370434‑M2/137‑1 (MQ=255)                                                                                                                                        gtggggTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGcaca     >  1:481610‑M2/7‑143 (MQ=255)                                                                                                                                          ggggTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAAGCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACg   <  1:860470‑M2/139‑1 (MQ=255)                                                                                                                                           gggTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTCGCGGCATGAGCACACgg  >  2:590899‑M2/4‑143 (MQ=255)                                                                                                                                              |                                                                                                                                            TGGTCGGCGGAATGCGCGCTTCTATTTATAACGCCATGCCGCTGGAAGGCGTTAAAGCGCTGACAGACTTCATGGTTGAGTTCGAACGCCGTCACGGTTAATGCCGAAATTTTGCTTAATCCCCACAGCCAGCCTGTGGGGTTTTTATTTCTGTTGTAGAGAGTTGAGTTCATGGAATCCCTGACGTTACAACCCATCGCTCGTGTCGATGGCACTATTAATCTGCCCGGTTCCAAGAGCGTTTCTAACCGCGCTTTATTGCTGGCGGCATTAGCACACGG  >  NC_000913/958641‑958921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.