New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1239530 =	35 (0.740)	4 (0.090)	3/252	NT	10.8%	coding (652/1071 nt)	dadX	alanine racemase 2
	?	NC_000913	1239563 =	33 (0.730)					coding (685/1071 nt)	dadX	alanine racemase 2

GGCGCGATGGCGCGTATTGAGCAGGCGGCGGAGGGGCTGGAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATG  >  NC_000913/1239389‑1239662                                                                                                                                              |                                                                                                                                     cccgccggcgtgcgcggcggctccgaggccgattcgccgttcctcgcgcgcagtatagcgaccgccgtagcccacacgctcgcccgcttttagcgtctggacaccaataatctcactgcttagcgtcatcaccggacgtaaTc                                                                                                                                     >  2:931066‑M1/142‑143 (MQ=255)     cgATGGCCGGTGTTGAGCAGGCGGCGGAGGGGCTGTAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCAGTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGt                                                                                                                                 <  2:303267/143‑1 (MQ=255)        gcgtaccctgcggcgacaatgccgattcgctgttcatcgcgcgcagtatagcgaccgccgtagcccacacgctcgcccgcttttagcgtctggacaccaataatctcactgcttagcgtcatcaccggacgtaacccggcatt                                                                                                                              <  1:865781‑M1/9‑5 (MQ=255)              gTATTGGGCGGGCGGGGGAGGGGCTTGTGTGTCGGCGTTCGTTGTCCCATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGt                                                                                                                        <  2:649006/143‑1 (MQ=255)                       aGGCGGCGGAGGGGCTGGAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGcc                                                                                                               >  1:881676/1‑143 (MQ=255)                                  gggCTGGAGTGGCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGAtt                                                                                                    <  1:904240/143‑1 (MQ=255)                                    gctgtttatcgcgcgcagtatagcgaccgccgtagcccacacgctcgcccgcttttagcgtctggacaccaataatctcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTAc                                                                                                  >  1:597294‑M1/107‑143 (MQ=255)                                    gctgttcatcgcgcgcagtatagcgaccgccgtagcccacacgctcgcccgcttttagcgtctggacaccaataatctcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTAc                                                                                                  >  1:140793‑M1/107‑143 (MQ=255)                                     cTGGAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGCAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCCGTGGCGTGATATCGCCCATACCGGATTCCg                                                                                                 >  2:804935/1‑143 (MQ=255)                                       ggAGTGTCGGCGTGCGTTGTCCACTTCGGCCGCGACTCGGGGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTc                                                                                               <  1:731112/143‑1 (MQ=255)                                             tCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATCATGTTGTATGGCGCTTCGCCGTCCGGCCAGTGGCGGGATATCGCCAATACCGGAATACGTCCggcgg                                                                                         >  2:502870/1‑140 (MQ=255)                                                gCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATGACGTCCGGtgatga                                                                                      >  2:647817/1‑143 (MQ=255)                                                  gttcgttGGCCAATTCGGCGGGGACGCTGTGGCACCCGGAGGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACg                                                                                    <  1:153791/143‑1 (MQ=255)                                                   ttcgttGTCCAATTCTGCGGCGTCTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCCTTATTTCATATTGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGc                                                                                   <  1:844837/143‑1 (MQ=255)                                                   gtcgttGGCCAATTCGGCGGCGGCCCGGTGGCACCCGGAAGCGCATTTTGACTGGGTGCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGc                                                                                   <  2:739897/142‑1 (MQ=255)                                                      cttGTCCAAGTCGGCGGCGCATCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGTCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTaa                                                                                <  1:140248/142‑1 (MQ=255)                                                       ttGTCCATTTCGTCGGCGACTCTGTGGGACGTGGAGTCGCAGCGTGTGTGGCTGCCCCCTCGCATTATTTTGTATGGCGCTTCGCCTTTCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAg                                                                               <  1:213849/143‑1 (MQ=255)                                                       ttGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAg                                                                               >  1:366313/1‑143 (MQ=255)                                                        tGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGTCGCTACGc                                                                              >  1:240977/1‑143 (MQ=255)                                                             aaTTCGGCGGCGACTCTGTTGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga                                                                         <  1:736505/143‑1 (MQ=255)                                                             aaTTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGTTTCGGCCTGGCTTTATTTAGTATGTGGTGGCTCAGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga                                                                         <  1:690259/143‑1 (MQ=255)                                                                   gcggcgACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTgagcctat                                                                   >  1:665919/1‑138 (MQ=255)                                                                    cgggggctctGTGGCGGCCGGAAGCGGATTTGGGCGGGGTGCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGGCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGattatt                                                                  <  2:502010/137‑1 (MQ=255)                                                                            ctGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATGTCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCa                                                          >  1:417017/1‑143 (MQ=255)                                                                               tgGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTGCGTACGGTGGTGACGCTAAGCAGTGAGATTATTGGTGTCCAggc                                                       >  1:262940/1‑141 (MQ=255)                                                                                  cACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGCTTATTGGTGTCCAGACGCt                                                    >  1:887778/1‑143 (MQ=255)                                                                                   aCCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGAGTATTGGTGTCCAGACGCtc                                                   >  2:441732/1‑142 (MQ=255)                                                                                     ccGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGGCAGTGGGGTGATATCGACAATACCGGGTGACGGCCGGTGATGACGCTAAGCAGTGAGATGATTGGTGACCAGACGCTaca                                                 >  1:34333/1‑141 (MQ=255)                                                                                      cGGAAGCGCATTTTGACTGGGTTCGGCCGGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTaaaa                                                <  1:510020/143‑1 (MQ=255)                                                                                          aGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCgg                                            <  1:445830/143‑1 (MQ=255)                                                                                                 tttGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGGCAGTGGCGTGATATGGCTGATAGCGGATTACGTCCGGTGAGGCCGCTGACCCCGGCACTCATTGGTGTCCATACGGTCAATGCGTGCGAgtg                                     >  2:391361/1‑141 (MQ=255)                                                                                                   tgtcTGGGTTGGGTTTGGAATTATTTGGTATGGCTCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATAGCGGATTACGTACGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCgtg                                   <  2:330991/140‑1 (MQ=255)                                                                                                               gCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGCGATTATTGGTGTCCAGACGCTAAAAGCGGGCGGGGGTGTGGGCTTcggcg                       >  2:347332/1‑143 (MQ=255)                                                                                                                 tcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga                                                                         <  2:24342‑M1/62‑1 (MQ=255)                                                                                                                 tcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga                                                                         >  1:24342‑M1/30‑91 (MQ=255)                                                                                                                  tagCATTATTGTGGATGGCGGTTCGCCGTCCGGTCAGTGGCGGGATACGGCCAATACCGGATTACGTCCGGTGATGACGCTCAGCAGTGAGATTATTGTGGGCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTc                    <  1:896693/141‑1 (MQ=255)                                                                                                                  tGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGGACGGGTGGGATCgggcggcg                    >  2:502363/1‑141 (MQ=255)                                                                                                                    gCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGACCAGACGATACAAACGGGCGAACGTGTGGGCTAcggagggggg                  >  2:450501/1‑139 (MQ=255)                                                                                                                               tATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAATGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTCCGGCGGTCGCTATACTgcgcc       >  1:47014/1‑142 (MQ=255)                                                                                                                                    cgcTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATg  <  1:197220/143‑1 (MQ=255)                                                                                                                                    cgcTTCGCCGGCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATg  <  1:200666/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                     GGCGCGATGGCGCGTATTGAGCAGGCGGCGGAGGGGCTGGAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATG  >  NC_000913/1239389‑1239662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.