| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1239530 = | 35 (0.740) | 4 (0.090) | 3/252 | NT | 10.8% | coding (652/1071 nt) | dadX | alanine racemase 2 |
| ? | NC_000913 | 1239563 = | 33 (0.730) | coding (685/1071 nt) | dadX | alanine racemase 2 | |||||
GGGCTGGAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAACAGCGAATCGGCATTGTCGCCGCAGGGTACGCCGACGGT > NC_000913/1239422‑1239703 | gggCTGGAGTGGCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGAtt < 1:904240/143‑1 (MQ=255) gctgtttatcgcgcgcagtatagcgaccgccgtagcccacacgctcgcccgcttttagcgtctggacaccaataatctcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTAc > 1:597294‑M1/107‑143 (MQ=255) gctgttcatcgcgcgcagtatagcgaccgccgtagcccacacgctcgcccgcttttagcgtctggacaccaataatctcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTAc > 1:140793‑M1/107‑143 (MQ=255) cTGGAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGCAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCCGTGGCGTGATATCGCCCATACCGGATTCCg > 2:804935/1‑143 (MQ=255) ggAGTGTCGGCGTGCGTTGTCCACTTCGGCCGCGACTCGGGGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTc < 1:731112/143‑1 (MQ=255) tCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATCATGTTGTATGGCGCTTCGCCGTCCGGCCAGTGGCGGGATATCGCCAATACCGGAATACGTCCggcgg > 2:502870/1‑140 (MQ=255) gCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATGACGTCCGGtgatga > 2:647817/1‑143 (MQ=255) gttcgttGGCCAATTCGGCGGGGACGCTGTGGCACCCGGAGGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACg < 1:153791/143‑1 (MQ=255) ttcgttGTCCAATTCTGCGGCGTCTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCCTTATTTCATATTGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGc < 1:844837/143‑1 (MQ=255) gtcgttGGCCAATTCGGCGGCGGCCCGGTGGCACCCGGAAGCGCATTTTGACTGGGTGCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGc < 2:739897/142‑1 (MQ=255) cttGTCCAAGTCGGCGGCGCATCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGTCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTaa < 1:140248/142‑1 (MQ=255) ttGTCCATTTCGTCGGCGACTCTGTGGGACGTGGAGTCGCAGCGTGTGTGGCTGCCCCCTCGCATTATTTTGTATGGCGCTTCGCCTTTCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAg < 1:213849/143‑1 (MQ=255) ttGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAg > 1:366313/1‑143 (MQ=255) tGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGTCGCTACGc > 1:240977/1‑143 (MQ=255) aaTTCGGCGGCGACTCTGTTGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga < 1:736505/143‑1 (MQ=255) aaTTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGTTTCGGCCTGGCTTTATTTAGTATGTGGTGGCTCAGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga < 1:690259/143‑1 (MQ=255) gcggcgACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTgagcctat > 1:665919/1‑138 (MQ=255) cgggggctctGTGGCGGCCGGAAGCGGATTTGGGCGGGGTGCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGGCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGattatt < 2:502010/137‑1 (MQ=255) ctGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATGTCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCa > 1:417017/1‑143 (MQ=255) tgGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTGCGTACGGTGGTGACGCTAAGCAGTGAGATTATTGGTGTCCAggc > 1:262940/1‑141 (MQ=255) cACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGCTTATTGGTGTCCAGACGCt > 1:887778/1‑143 (MQ=255) aCCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGAGTATTGGTGTCCAGACGCtc > 2:441732/1‑142 (MQ=255) ccGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGGCAGTGGGGTGATATCGACAATACCGGGTGACGGCCGGTGATGACGCTAAGCAGTGAGATGATTGGTGACCAGACGCTaca > 1:34333/1‑141 (MQ=255) cGGAAGCGCATTTTGACTGGGTTCGGCCGGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTaaaa < 1:510020/143‑1 (MQ=255) aGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCgg < 1:445830/143‑1 (MQ=255) tttGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGGCAGTGGCGTGATATGGCTGATAGCGGATTACGTCCGGTGAGGCCGCTGACCCCGGCACTCATTGGTGTCCATACGGTCAATGCGTGCGAgtg > 2:391361/1‑141 (MQ=255) tgtcTGGGTTGGGTTTGGAATTATTTGGTATGGCTCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATAGCGGATTACGTACGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCgtg < 2:330991/140‑1 (MQ=255) gCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGCGATTATTGGTGTCCAGACGCTAAAAGCGGGCGGGGGTGTGGGCTTcggcg > 2:347332/1‑143 (MQ=255) tcactgcttagcgtcatcaccggacgtaatccggtattggcgatatcacgccactgaccggaTTACGTCCGGTGATGACGCTAAGCAGTga > 1:24342‑M2/63‑91 (MQ=255) tcactgcttagcgtcatcaccggacgtaatccggtattggcgatatcacgccactgaccggaTTACGTCCGGTGATGACGCTAAGCAGTga < 2:24342‑M2/29‑1 (MQ=255) tcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga > 1:24342‑M1/30‑91 (MQ=255) tcactgcttagcgtcatcaccggacgtaaTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTga < 2:24342‑M1/62‑1 (MQ=255) tagCATTATTGTGGATGGCGGTTCGCCGTCCGGTCAGTGGCGGGATACGGCCAATACCGGATTACGTCCGGTGATGACGCTCAGCAGTGAGATTATTGTGGGCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTc < 1:896693/141‑1 (MQ=255) tGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGGACGGGTGGGATCgggcggcg > 2:502363/1‑141 (MQ=255) gCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGACCAGACGATACAAACGGGCGAACGTGTGGGCTAcggagggggg > 2:450501/1‑139 (MQ=255) tATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAATGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTCCGGCGGTCGCTATACTgcgcc > 1:47014/1‑142 (MQ=255) cgcTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATg < 1:197220/143‑1 (MQ=255) cgcTTCGCCGGCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATg < 1:200666/143‑1 (MQ=255) gtaatccggtattggcgatatcacgccactgaccggaTTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAACAGc > 1:140793‑M2/38‑143 (MQ=255) gtaatccggtattggcgatatcacgccactgaccggaTTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATAAACAGc > 1:597294‑M2/38‑143 (MQ=255) GTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAACAGCGAATCGGc < 2:886368‑M1/143‑1 (MQ=255) TCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAACAGCGAATCGGCa < 1:503147‑M1/143‑1 (MQ=255) tGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAACAGCGAATCGGCATTGt > 2:894981/1‑143 (MQ=255) gCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAGCAGCGCATCGGCATGGTcg > 2:42730/1‑143 (MQ=255) gTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCGAAACGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGCACAGCGAATCGGCATTGTcgcc > 1:933994/1‑143 (MQ=255) cAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGCAGAGCAGCGAATCGGCATTGTCGCAGCAGGGTACg > 2:427775/1‑143 (MQ=255) aatgccgggTTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAACAGCGAATCGGCATTGTCGCCGCAGGGTACGc < 1:865781‑M2/134‑1 (MQ=255) gaTTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGAGGAACGGCGAATCGGCCTCGGAGCCGCCGCGCACGccggcggg > 2:931066‑M2/3‑142 (MQ=255) | GGGCTGGAGTGTCGGCGTTCGTTGTCCAATTCGGCGGCGACTCTGTGGCACCCGGAAGCGCATTTTGACTGGGTTCGGCCTGGCATTATTTTGTATGGCGCTTCGCCGTCCGGTCAGTGGCGTGATATCGCCAATACCGGATTACGTCCGGTGATGACGCTAAGCAGTGAGATTATTGGTGTCCAGACGCTAAAAGCGGGCGAGCGTGTGGGCTACGGCGGTCGCTATACTGCGCGCGATGAACAGCGAATCGGCATTGTCGCCGCAGGGTACGCCGACGGT > NC_000913/1239422‑1239703 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |