New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1460521	39 (0.820)	4 (0.090)	3/250	NT	8.9%	coding (51/423 nt)	paaI	phenylacetyl‑CoA thioesterase
	?	NC_000913	= 1460536	45 (1.000)					coding (66/423 nt)	paaI	phenylacetyl‑CoA thioesterase

TCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTG  >  NC_000913/1460384‑1460663                                                                                                                                          |                                                                                                                                               tCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTgcgc                                                                                                                                           <  1:196103/143‑1 (MQ=255)    ttGAAAATCTACAGCATCACTATGGCGACGACAGATTACACCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGAGGCCTGCCCCaa                                                                                                                                        >  2:69353/1‑143 (MQ=255)        aaaTCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCACTGTATGAGAACGATGCCTGCGCCACAgcg                                                                                                                                    >  2:377242/1‑143 (MQ=255)           tCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCaagcgctttggcgca                                                                                                                                 <  1:882834‑M1/143‑16 (MQ=255)           tCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCaagcgctttggcgca                                                                                                                                 <  1:880199‑M1/143‑16 (MQ=255)            ctagggcatcaCTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTg                                                                                                                                >  2:642893‑M2/6‑142 (MQ=255)              aCAGCATCACTGTGGCGAAGCACGCTATCGCCCATGTTCATGGCTGCGCCAGCGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTggc                                                                                                                              >  2:262367‑M2/1‑140 (MQ=255)                aGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGCACGATGCCTGCGCCAAAGCGCTTggcat                                                                                                                            <  1:360506‑M2/143‑6 (MQ=255)                  cATCCCGATGGCGAAGGACGCTAGCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTggcatcg                                                                                                                          >  2:702381‑M2/1‑136 (MQ=255)                         aTGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGTGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTAt                                                                                                                   <  2:58938/143‑1 (MQ=255)                            gCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTAtctc                                                                                                                >  2:882059/1‑143 (MQ=255)                              gaagaaCGCGATCGCACGTGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCaa                                                                                                              <  2:114158/143‑1 (MQ=255)                                  aaCGCTAGCGCCCAGGTTCAGTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGa                                                                                                          <  1:57459/143‑1 (MQ=255)                                   gcGCTATCGCCGATGTTCATTGCTGCGCCAACGGGCGCGTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAGAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGAt                                                                                                         <  2:157226/142‑1 (MQ=255)                                            cccATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAACTGCCCATGCAATGTGAGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGACGAAGGCttc                                                                                                >  2:564261/1‑142 (MQ=255)                                             ccATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCaagcgctttggcgcaggcatcgttct                                                                                                                      <  2:268471‑M1/120‑27 (MQ=255)                                             ccATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCaagcgctttggcgcaggcatcgttct                                                                                                                      >  1:268471‑M1/1‑94 (MQ=255)                                             ccATGCTCATTCCTGCGCCAACGGCTGCTTCTGGAGAGCGGTTATGCGTCATAAGGCCTCGCAAAATGCCCATGCAATGTATGAGAACGATGCGTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTg                                                                                               <  1:73288/143‑1 (MQ=255)                                               aTGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCCTGCGATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACCTTATCTCAATGGATGACGGATGTGCt                                                                                             >  2:792620/1‑143 (MQ=255)                                                 gTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTCGCTgc                                                                                           >  2:76823/1‑142 (MQ=255)                                                  ttCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATACGGCCTGGCAAAATGCGCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTgga                                                                                          >  2:774481/1‑141 (MQ=255)                                                  ttCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTa                                                                                          <  2:427098/143‑1 (MQ=255)                                                        gctgcGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGCTGAAGGCTTTGCTGTAGTGAcc                                                                                    >  2:817651/1‑143 (MQ=255)                                                          tgcGCCAGCGGGCGCTTCTGGACAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCAt                                                                                  <  2:583992/143‑1 (MQ=255)                                                          tgcGCCAACGGGCGCTTCTGGAGAGCGCTTATGAGTCATAAGACCTGGCAAAATGCACGTGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATGATCTCAATGGATGAAGGCTTTGCTCTAgagaactt                                                                                  >  2:870013/1‑139 (MQ=255)                                                          ggcgcGAGCGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCAt                                                                                  <  2:128955/142‑1 (MQ=255)                                                                   gggCGCTTCTGGAGAGGGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGGAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCAc                                                                         <  2:387765/143‑1 (MQ=255)                                                                        ctccTGGGGAGCGGCTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGcac                                                                    <  1:581606/140‑1 (MQ=255)                                                                          tCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGCAGTGACCTTGACCGTCACTGcccga                                                                  >  1:27285/1‑139 (MQ=255)                                                                              gagaGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCCTGACCGTCACTGCACAAATGc                                                              >  2:25558/1‑143 (MQ=255)                                                                                 agCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGGCACTGCACAAATGCGTa                                                           >  1:110891/1‑143 (MQ=255)                                                                                    ggTTAGGAGGCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTATGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACg                                                        <  1:485252/143‑1 (MQ=255)                                                                                     gTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCGTCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAGATGCTTAACgc                                                       >  2:71183/1‑142 (MQ=255)                                                                                             tCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCaaa                                               >  1:894975/1‑143 (MQ=255)                                                                                               aTAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACGTTATCTCAATGGATGAAGGCTTTGCTGTAGTGAGCATGACCGTCACTGCACCAATGCTTAACGGTCATCAAAGt                                             >  2:342381/1‑143 (MQ=255)                                                                                                tAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGATTGGCATCGACATTATCTAAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGtt                                            >  1:571860/1‑143 (MQ=255)                                                                                                         gCAAAATGCGCATGCAATGTATGTGAACTATTCTTGCGGCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCAcggcg                                   <  1:501444/143‑1 (MQ=255)                                                                                                         gCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCAcggcg                                   <  2:433035/143‑1 (MQ=255)                                                                                                          cAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCAcggcgg                                  >  2:145814/1‑143 (MQ=255)                                                                                                                  ccATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAt                          >  1:409763/1‑143 (MQ=255)                                                                                                                  ccATGCAAGGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAt                          <  1:362426/143‑1 (MQ=255)                                                                                                                   cATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAtt                         >  1:547148/1‑143 (MQ=255)                                                                                                                   cATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGCCTCTGCAGGTGTGACTGTGACGGCAACCCCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAtt                         >  1:641870/1‑143 (MQ=255)                                                                                                                     tGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAtttt                       <  1:177482/143‑1 (MQ=255)                                                                                                                      gcgagggaTGAGAACGATGCCTGCGCCAAAGGGCTGGGCATCGACAGTAGCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTc                      <  1:713148/136‑1 (MQ=255)                                                                                                                            tATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGc                >  1:613898/1‑143 (MQ=255)                                                                                                                                agaACGATGCCTGCGCCAAAGCGCTTggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgg                                   <  2:268471‑M2/120‑95 (MQ=255)                                                                                                                                agaACGATGCCTGCGCCAAAGCGCTTggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgg                                   >  1:268471‑M2/1‑26 (MQ=255)                                                                                                                                    cGATGCCaagcgctttggcgcaggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgggcgctagcgtccttcgccatcgggatg        >  2:702381‑M1/1‑7 (MQ=255)                                                                                                                                    cGATGCCTGCTCTAAAGCGCTTGTCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTg        <  2:60026/143‑1 (MQ=255)                                                                                                                                    cGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTGACGGTCATCAACGTTGCCAAGGCGGGACGCTATTGTCACTGGCTGATACTg        >  2:106647/1‑143 (MQ=255)                                                                                                                                      aTGCCaagcgctttggcgcaggcatcgtgctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgggcgatagcgttcttcgccatagtgatgct      <  1:360506‑M1/143‑139 (MQ=255)                                                                                                                                      aTGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATa           <  1:659671/138‑1 (MQ=255)                                                                                                                                      aTGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAATTGCCACGGCGGGCAGCTATTTTCACTGGCTGATa           >  2:659671/1‑138 (MQ=255)                                                                                                                                       tGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATAAAAGTTGCCACGGCGGGCAACTCTTGTCACTGGATGATGCTGGCt     >  2:219883/1‑143 (MQ=255)                                                                                                                                        gCCaagcgctttggcgcaggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgctggcgcagccatgaacatgggcgatagcgtgcttcgccacagtgatgctgt    >  2:262367‑M1/1‑3 (MQ=255)                                                                                                                                         ccTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCttt   >  1:438272/1‑143 (MQ=255)                                                                                                                                          caagcgctttggcgcaggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgggcgatagcgttcttcgccatagtgatgccctag  >  2:642893‑M1/1‑1 (MQ=255)                                                                                                                                          |                                                                                                                                               TCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTG  >  NC_000913/1460384‑1460663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.