New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1460521	39 (0.820)	4 (0.090)	3/250	NT	8.9%	coding (51/423 nt)	paaI	phenylacetyl‑CoA thioesterase
	?	NC_000913	= 1460536	45 (1.000)					coding (66/423 nt)	paaI	phenylacetyl‑CoA thioesterase

CTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAAT  >  NC_000913/1460395‑1460677                                                                                                                                              |                                                                                                                                              ctagggcatcaCTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTg                                                                                                                                              >  2:642893‑M2/6‑142 (MQ=255)   aCAGCATCACTGTGGCGAAGCACGCTATCGCCCATGTTCATGGCTGCGCCAGCGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTggc                                                                                                                                            >  2:262367‑M2/1‑140 (MQ=255)     aGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGCACGATGCCTGCGCCAAAGCGCTTggcat                                                                                                                                          <  1:360506‑M2/143‑6 (MQ=255)       cATCCCGATGGCGAAGGACGCTAGCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTggcatcg                                                                                                                                        >  2:702381‑M2/1‑136 (MQ=255)              aTGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGTGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTAt                                                                                                                                 <  2:58938/143‑1 (MQ=255)                 gCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTAtctc                                                                                                                              >  2:882059/1‑143 (MQ=255)                   gaagaaCGCGATCGCACGTGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCaa                                                                                                                            <  2:114158/143‑1 (MQ=255)                       aaCGCTAGCGCCCAGGTTCAGTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGa                                                                                                                        <  1:57459/143‑1 (MQ=255)                        gcGCTATCGCCGATGTTCATTGCTGCGCCAACGGGCGCGTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAGAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGAt                                                                                                                       <  2:157226/142‑1 (MQ=255)                                 cccATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAACTGCCCATGCAATGTGAGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGACGAAGGCttc                                                                                                              >  2:564261/1‑142 (MQ=255)                                  ccATGCTCATTCCTGCGCCAACGGCTGCTTCTGGAGAGCGGTTATGCGTCATAAGGCCTCGCAAAATGCCCATGCAATGTATGAGAACGATGCGTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTg                                                                                                             <  1:73288/143‑1 (MQ=255)                                    aTGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCCTGCGATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACCTTATCTCAATGGATGACGGATGTGCt                                                                                                           >  2:792620/1‑143 (MQ=255)                                      gTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTCGCTgc                                                                                                         >  2:76823/1‑142 (MQ=255)                                       ttCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATACGGCCTGGCAAAATGCGCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTgga                                                                                                        >  2:774481/1‑141 (MQ=255)                                       ttCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTa                                                                                                        <  2:427098/143‑1 (MQ=255)                                             gctgcGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGCTGAAGGCTTTGCTGTAGTGAcc                                                                                                  >  2:817651/1‑143 (MQ=255)                                               tgcGCCAGCGGGCGCTTCTGGACAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCAt                                                                                                <  2:583992/143‑1 (MQ=255)                                               tgcGCCAACGGGCGCTTCTGGAGAGCGCTTATGAGTCATAAGACCTGGCAAAATGCACGTGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATGATCTCAATGGATGAAGGCTTTGCTCTAgagaactt                                                                                                >  2:870013/1‑139 (MQ=255)                                               ggcgcGAGCGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCAt                                                                                                <  2:128955/142‑1 (MQ=255)                                                        gggCGCTTCTGGAGAGGGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGGAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCAc                                                                                       <  2:387765/143‑1 (MQ=255)                                                             ctccTGGGGAGCGGCTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGcac                                                                                  <  1:581606/140‑1 (MQ=255)                                                               tCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGCAGTGACCTTGACCGTCACTGcccga                                                                                >  1:27285/1‑139 (MQ=255)                                                                   gagaGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCCTGACCGTCACTGCACAAATGc                                                                            >  2:25558/1‑143 (MQ=255)                                                                      agCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGGCACTGCACAAATGCGTa                                                                         >  1:110891/1‑143 (MQ=255)                                                                         ggTTAGGAGGCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTATGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACg                                                                      <  1:485252/143‑1 (MQ=255)                                                                          gTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCGTCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAGATGCTTAACgc                                                                     >  2:71183/1‑142 (MQ=255)                                                                                  tCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCaaa                                                             >  1:894975/1‑143 (MQ=255)                                                                                    aTAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACGTTATCTCAATGGATGAAGGCTTTGCTGTAGTGAGCATGACCGTCACTGCACCAATGCTTAACGGTCATCAAAGt                                                           >  2:342381/1‑143 (MQ=255)                                                                                     tAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGATTGGCATCGACATTATCTAAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGtt                                                          >  1:571860/1‑143 (MQ=255)                                                                                              gCAAAATGCGCATGCAATGTATGTGAACTATTCTTGCGGCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCAcggcg                                                 <  1:501444/143‑1 (MQ=255)                                                                                              gCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCAcggcg                                                 <  2:433035/143‑1 (MQ=255)                                                                                               cAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCAcggcgg                                                >  2:145814/1‑143 (MQ=255)                                                                                                       ccATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAt                                        >  1:409763/1‑143 (MQ=255)                                                                                                       ccATGCAAGGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAt                                        <  1:362426/143‑1 (MQ=255)                                                                                                        cATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAtt                                       >  1:547148/1‑143 (MQ=255)                                                                                                        cATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGCCTCTGCAGGTGTGACTGTGACGGCAACCCCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAtt                                       >  1:641870/1‑143 (MQ=255)                                                                                                          tGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTAtttt                                     <  1:177482/143‑1 (MQ=255)                                                                                                           gcgagggaTGAGAACGATGCCTGCGCCAAAGGGCTGGGCATCGACAGTAGCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTc                                    <  1:713148/136‑1 (MQ=255)                                                                                                                 tATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGc                              >  1:613898/1‑143 (MQ=255)                                                                                                                     agaACGATGCCTGCGCCAAAGCGCTTggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgg                                                 <  2:268471‑M2/120‑95 (MQ=255)                                                                                                                     agaACGATGCCTGCGCCAAAGCGCTTggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgg                                                 >  1:268471‑M2/1‑26 (MQ=255)                                                                                                                         cGATGCCTGCTCTAAAGCGCTTGTCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTg                      <  2:60026/143‑1 (MQ=255)                                                                                                                         cGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTGACGGTCATCAACGTTGCCAAGGCGGGACGCTATTGTCACTGGCTGATACTg                      >  2:106647/1‑143 (MQ=255)                                                                                                                           aTGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATa                         <  1:659671/138‑1 (MQ=255)                                                                                                                           aTGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAATTGCCACGGCGGGCAGCTATTTTCACTGGCTGATa                         >  2:659671/1‑138 (MQ=255)                                                                                                                            tGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATAAAAGTTGCCACGGCGGGCAACTCTTGTCACTGGATGATGCTGGCt                   >  2:219883/1‑143 (MQ=255)                                                                                                                              ccTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCttt                 >  1:438272/1‑143 (MQ=255)                                                                                                                                tGCGCCAAAGCGCTTggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgggcgatagcgttcttcgccatagtgatgctgtaga               <  1:880199‑M2/143‑129 (MQ=255)                                                                                                                                tGCGCCAAAGCGCTTggcatcgttctcatacattgcatgggcattttgccaggccttatgactcataaccgctctccagaagcgcccgttggcgcagcaatgaacatgggcgatagcgttcttcgccatagtgatgctgtaga               <  1:882834‑M2/143‑129 (MQ=255)                                                                                                                                  cgcCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCt             >  1:537966/1‑143 (MQ=255)                                                                                                                                   gcCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTa            >  1:772246/1‑143 (MQ=255)                                                                                                                                       aaGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTCGTGACCATGGCGGGCACTGCACAAAGGCATAACGGTACTGAAAGTTGCCGCGGCCGGCAGCTAGTTTGACTGGAGCGTAGTGCCTGTGCCGACGcg        >  2:130345/1‑142 (MQ=255)                                                                                                                                       aaGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGcc        >  1:114196/1‑143 (MQ=255)                                                                                                                                         ccgcTTGGCCTTGCCAGTATCTCAATGGATGAAGGCTTTCCTGTAGTGACCATGGCCGTCACTGCACACAGTCTCAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTg      <  2:211036/142‑1 (MQ=255)                                                                                                                                             ttGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACAGCGGGCAGCTATTTTTACTGGAGGAGACCCCCCGCGCCTACGCCTGCCAt  >  1:347705/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                              CTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATTGCTGCGCCAACGGGCGCTTCTGGAGAGCGGTTATGAGTCATAAGGCCTGGCAAAATGCCCATGCAATGTATGAGAACGATGCCTGCGCCAAAGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAAT  >  NC_000913/1460395‑1460677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.