New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2048904	44 (0.930)	5 (0.110)	5/250	NT	11.5%	coding (3967/7077 nt)	yeeJ	inverse autotransporter adhesin
	?	NC_000913	= 2048914	35 (0.780)					coding (3977/7077 nt)	yeeJ	inverse autotransporter adhesin

GTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACA  >  NC_000913/2048763‑2049041                                                                                                                                              |                                                                                                                                          gTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGctcctc                                                                                                                                          <  1:621277/143‑1 (MQ=255) gTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACGTATACAAATACCAGctcctc                                                                                                                                          >  2:850131/1‑143 (MQ=255)   tGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCATGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGa                                                                                                                                        <  2:297422/143‑1 (MQ=255)     atattgatGGCTTTCCGGTGAACGGTGTGACTGTGAACGTCGCCATCACCGCAGCTACAGCCGAAATGACTAATGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATa                                                                                                                                      <  2:337330/137‑1 (MQ=255)       aataatGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGa                                                                                                                                    >  1:410684/1‑143 (MQ=255)       aataatGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGa                                                                                                                                    <  1:627064/143‑1 (MQ=255)        ataatGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGaa                                                                                                                                   <  2:585663/143‑1 (MQ=255)         tggtGGCGTTGCGGTGAGGGGGGGGGCTGTGGAGTGCGCGAGCAGCGCAGCGAGAGCCGAAAGGGCGGACGGGGGTAACGGAGTGACGAACGAGGAGTGTAAGGCGACCGTCACTTATACCAATACCCGCTCCTCGATAGAAt                                                                                                                                  <  2:873357/140‑1 (MQ=255)         taatGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAAt                                                                                                                                  <  1:295206/143‑1 (MQ=255)                tttCGGGTGATAGGTGTTACTGGGAGCTTCCCGAGCAAGGCATGGACGGCGGAAGTGGCGAGCGGCGGTTAAAGCTTGACGAGCGAACAGGGTAGGGCTACCGTCGCTTAGACCAATACCCGCTCCTCGATAGAATCAGGAGc                                                                                                                           <  2:871594/143‑1 (MQ=255)                tgtccGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTgattctatcgaggagc                                                                                                                           <  2:541828‑M1/141‑17 (MQ=255)                  tCCGGCCAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTCACAAACGAACAGTGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCga                                                                                                                         <  1:593665/143‑1 (MQ=255)                   gcGGGGAAAGGTGGGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCgag                                                                                                                        <  1:350398/142‑1 (MQ=255)                    cGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGACATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCgaga                                                                                                                       <  1:850131/143‑1 (MQ=255)                      gTGAAAGGTGTGACCGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCCATACCCGCTCCTCGATAGAATCAGGCGCGAGAcc                                                                                                                     >  1:698154/1‑143 (MQ=255)                       tGAGAGGTGTGACTGTGAACTTCGACAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTgattctatcgaggagcgggtatt                                                                                                                    <  2:920992‑M1/143‑24 (MQ=255)                       tGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAAGACCCGCTCCTCGATAGAATCAGGAGCGAGACCg                                                                                                                    >  1:731923/1‑143 (MQ=255)                                      tgAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGTCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAAGACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATGCGGTTGAGGcc                                                                                                     >  1:254993/1‑143 (MQ=255)                                         aCTCCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTgattctatcgaggagcgggtattggtataagtgacggtagc                                                                                                  <  1:692412‑M1/143‑42 (MQ=255)                                              aCCAGCCACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACTAACAGGGTAAGGCTACCGTAACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGa                                                                                             <  1:822596/143‑1 (MQ=255)                                                            gACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACGAATACCCGCTCCTCGATAGAATCAGGCGCGAGAGCGGCAACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCa                                                                               >  1:382573/1‑143 (MQ=255)                                                               cgCCGAACTGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATGCCCGCTCCTCGATAGAATCAGGTGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGc                                                                            <  1:345002/142‑1 (MQ=255)                                                                  cGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGCGGCCAGTCTGGCAAATGGTAGCTCCACGCGTa                                                                         >  2:456086/1‑143 (MQ=255)                                                                        gACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACAt                                                                   <  1:571366/143‑1 (MQ=255)                                                                        gACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACAt                                                                   >  1:269080/1‑143 (MQ=255)                                                                         atgAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAACTGGTAGCTCCACGCCTAGCCCATc                                                                  >  1:467599/3‑143 (MQ=255)                                                                         aCGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATc                                                                  >  1:143942/1‑143 (MQ=255)                                                                           gAACGGCTGTGAAGCGGTGACGAACGAACACGGTAGGGCTACCGCCACTTATACCAATACCCGCTCCTCGATAGACTCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCaa                                                                <  2:471078/143‑1 (MQ=255)                                                                           gAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTgattctatcgaggagcg                                                                                                                          <  2:1416‑M1/85‑18 (MQ=255)                                                                           gAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTgattctatcgaggagcg                                                                                                                          >  1:1416‑M1/1‑68 (MQ=255)                                                                            aaCGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATAAGGGTGGGGCCAGCCCGGCAAATGGTAGCTCCACGCTTAGCACATCAAt                                                               >  1:210866/1‑143 (MQ=255)                                                                             aCGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACTTATACCCGCTTCTAAATAAAAAAAGGAGAGAGAAAGGATACCGTAGAGGCCAGTATGGAAAATGGTATCTCCACGCTTAGCACACCAttt                                                              >  1:67533/1‑143 (MQ=255)                                                                                gcggTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAAt                                                           <  1:191159/143‑1 (MQ=255)                                                                                gcggGCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCCGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAAt                                                           <  2:159652/143‑1 (MQ=255)                                                                                    tCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGGCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACACCAATTAATGTcc                                                       >  1:51640/1‑142 (MQ=255)                                                                                      caGCAGTGAAGAACGACCAGGGAGAGGCGACCGTCACTTAGACCAATACCCGCGCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAAc                                                     <  1:500772/142‑1 (MQ=255)                                                                                             gACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAGTCGGGCGCGAAACCCGATACCGTTTAGGCCAGTCTGGAAACTGGTAGCTCCACCACTACCACATCAATTACTGCCAACGCTGAtc                                              >  2:531300/1‑142 (MQ=255)                                                                                                         gggTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGcac                                  <  1:187814/143‑1 (MQ=255)                                                                                                                gCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttcgtcatttcggctgtcgctgcgttgctggtggagt                           <  1:692412‑M2/143‑103 (MQ=255)                                                                                                                gCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACAGCTCAc                           >  1:530665/1‑143 (MQ=255)                                                                                                                gCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTAAACGCTGATGCGCCTACGGCACATCTCAc                           >  2:588645/1‑143 (MQ=255)                                                                                                                    ccGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGCGGCCAGTCTGGAAAATGGCAGCTCCACGCTTAGCACACCAACTAATGACAACGCTGACGCGTCTCCGCCCCATCTCCCCtcg                       >  2:855401/1‑141 (MQ=255)                                                                                                                       tCACTTATACCAAGACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTa                    <  1:61091/143‑1 (MQ=255)                                                                                                                           ttATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAACGTCAACGCTGATGCGGCTACGGCACATCCCACCTTCCTACAgg                >  2:815083/1‑143 (MQ=255)                                                                                                                               aCCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTGTACGGCACATCTCACATTGCTACAGGCACt            >  1:701724/1‑143 (MQ=255)                                                                                                                                ccAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTCCAGGCACtt           >  1:284060/1‑143 (MQ=255)                                                                                                                                 cAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACttt          >  1:868716/1‑143 (MQ=255)                                                                                                                                 cAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCCCACCTTGCTACAGGCACttt          >  2:213447/1‑143 (MQ=255)                                                                                                                                  aaTACCCGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttcgtcatttcggctgtcgctgcgttgctgtcgaagttcacagtcacacctctca         <  2:920992‑M2/143‑121 (MQ=255)                                                                                                                                   tgaCCCGCTCCTCGATAGACTCAGATGCGAGACCGGCTACCGGTGTGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACTTTGCTACAGGCACttttt        <  2:23699/141‑1 (MQ=255)                                                                                                                                     tcccGCTCCCCGACGGACTCCGGAGCGGGACCTGCGCCCGTTGAGGCCAGTCTGTAAAATGGTAGCTCCACGCGTAGCACATCCATTAATGTCAACGCTGATGCGTCTACTGCACATCTCACCTTGCTACAGGCACTTTTTGa      <  2:798164/142‑1 (MQ=255)                                                                                                                                     aCCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCGATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTCCAGGCACTTTTTGa      >  1:236869/1‑143 (MQ=255)                                                                                                                                        cGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttc                                                             <  2:1416‑M2/85‑69 (MQ=255)                                                                                                                                        cGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttc                                                             >  1:1416‑M2/1‑17 (MQ=255)                                                                                                                                        cGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGGATTGTTTTATAc   >  2:223170/1‑143 (MQ=255)                                                                                                                                        cGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATAc   >  1:574381/1‑143 (MQ=255)                                                                                                                                         gCTCCTCGATAGACTCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACa  <  2:644781/143‑1 (MQ=255)                                                                                                                                         gCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttcgtcatttcggctgtcgctgcgttgctggtgaagttcacagtcacacctttcaccggaca  <  2:541828‑M2/143‑128 (MQ=255)                                                                                                                                              |                                                                                                                                          GTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACA  >  NC_000913/2048763‑2049041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.