New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2048904	44 (0.930)	5 (0.110)	5/250	NT	11.5%	coding (3967/7077 nt)	yeeJ	inverse autotransporter adhesin
	?	NC_000913	= 2048914	35 (0.780)					coding (3977/7077 nt)	yeeJ	inverse autotransporter adhesin

TTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACAGTCTCCGCAGGCGA  >  NC_000913/2048778‑2049055                                                                                                                                         |                                                                                                                                              tttCGGGTGATAGGTGTTACTGGGAGCTTCCCGAGCAAGGCATGGACGGCGGAAGTGGCGAGCGGCGGTTAAAGCTTGACGAGCGAACAGGGTAGGGCTACCGTCGCTTAGACCAATACCCGCTCCTCGATAGAATCAGGAGc                                                                                                                                         <  2:871594/143‑1 (MQ=255)   tCCGGCCAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTCACAAACGAACAGTGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCga                                                                                                                                       <  1:593665/143‑1 (MQ=255)    gcGGGGAAAGGTGGGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCgag                                                                                                                                      <  1:350398/142‑1 (MQ=255)     cGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGACATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCgaga                                                                                                                                     <  1:850131/143‑1 (MQ=255)       gTGAAAGGTGTGACCGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCCATACCCGCTCCTCGATAGAATCAGGCGCGAGAcc                                                                                                                                   >  1:698154/1‑143 (MQ=255)        tGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAAGACCCGCTCCTCGATAGAATCAGGAGCGAGACCg                                                                                                                                  >  1:731923/1‑143 (MQ=255)                       tgAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGTCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAAGACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATGCGGTTGAGGcc                                                                                                                   >  1:254993/1‑143 (MQ=255)                               aCCAGCCACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACTAACAGGGTAAGGCTACCGTAACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGa                                                                                                           <  1:822596/143‑1 (MQ=255)                                             gACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACGAATACCCGCTCCTCGATAGAATCAGGCGCGAGAGCGGCAACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCa                                                                                             >  1:382573/1‑143 (MQ=255)                                                cgCCGAACTGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATGCCCGCTCCTCGATAGAATCAGGTGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGc                                                                                          <  1:345002/142‑1 (MQ=255)                                                   cGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGCGGCCAGTCTGGCAAATGGTAGCTCCACGCGTa                                                                                       >  2:456086/1‑143 (MQ=255)                                                         gACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACAt                                                                                 >  1:269080/1‑143 (MQ=255)                                                         gACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACAt                                                                                 <  1:571366/143‑1 (MQ=255)                                                          atgAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAACTGGTAGCTCCACGCCTAGCCCATc                                                                                >  1:467599/3‑143 (MQ=255)                                                          aCGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATc                                                                                >  1:143942/1‑143 (MQ=255)                                                            gAACGGCTGTGAAGCGGTGACGAACGAACACGGTAGGGCTACCGCCACTTATACCAATACCCGCTCCTCGATAGACTCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCaa                                                                              <  2:471078/143‑1 (MQ=255)                                                             aaCGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATAAGGGTGGGGCCAGCCCGGCAAATGGTAGCTCCACGCTTAGCACATCAAt                                                                             >  1:210866/1‑143 (MQ=255)                                                              aCGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACTTATACCCGCTTCTAAATAAAAAAAGGAGAGAGAAAGGATACCGTAGAGGCCAGTATGGAAAATGGTATCTCCACGCTTAGCACACCAttt                                                                            >  1:67533/1‑143 (MQ=255)                                                                 gcggTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAAt                                                                         <  1:191159/143‑1 (MQ=255)                                                                 gcggGCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCCGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAAt                                                                         <  2:159652/143‑1 (MQ=255)                                                                     tCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGGCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACACCAATTAATGTcc                                                                     >  1:51640/1‑142 (MQ=255)                                                                       caGCAGTGAAGAACGACCAGGGAGAGGCGACCGTCACTTAGACCAATACCCGCGCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAAc                                                                   <  1:500772/142‑1 (MQ=255)                                                                              gACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAGTCGGGCGCGAAACCCGATACCGTTTAGGCCAGTCTGGAAACTGGTAGCTCCACCACTACCACATCAATTACTGCCAACGCTGAtc                                                            >  2:531300/1‑142 (MQ=255)                                                                                          gggTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGcac                                                <  1:187814/143‑1 (MQ=255)                                                                                                 gCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttcgtcatttcggctgtcgctgcgttgctggtggagt                                         <  1:692412‑M2/143‑103 (MQ=255)                                                                                                 gCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACAGCTCAc                                         >  1:530665/1‑143 (MQ=255)                                                                                                 gCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTAAACGCTGATGCGCCTACGGCACATCTCAc                                         >  2:588645/1‑143 (MQ=255)                                                                                                     ccGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGCGGCCAGTCTGGAAAATGGCAGCTCCACGCTTAGCACACCAACTAATGACAACGCTGACGCGTCTCCGCCCCATCTCCCCtcg                                     >  2:855401/1‑141 (MQ=255)                                                                                                        tCACTTATACCAAGACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTa                                  <  1:61091/143‑1 (MQ=255)                                                                                                            ttATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAACGTCAACGCTGATGCGGCTACGGCACATCCCACCTTCCTACAgg                              >  2:815083/1‑143 (MQ=255)                                                                                                                aCCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTGTACGGCACATCTCACATTGCTACAGGCACt                          >  1:701724/1‑143 (MQ=255)                                                                                                                 ccAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTCCAGGCACtt                         >  1:284060/1‑143 (MQ=255)                                                                                                                  cAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACttt                        >  1:868716/1‑143 (MQ=255)                                                                                                                  cAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCCCACCTTGCTACAGGCACttt                        >  2:213447/1‑143 (MQ=255)                                                                                                                   aaTACCCGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttcgtcatttcggctgtcgctgcgttgctgtcgaagttcacagtcacacctctca                       <  2:920992‑M2/143‑121 (MQ=255)                                                                                                                    tgaCCCGCTCCTCGATAGACTCAGATGCGAGACCGGCTACCGGTGTGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACTTTGCTACAGGCACttttt                      <  2:23699/141‑1 (MQ=255)                                                                                                                      tcccGCTCCCCGACGGACTCCGGAGCGGGACCTGCGCCCGTTGAGGCCAGTCTGTAAAATGGTAGCTCCACGCGTAGCACATCCATTAATGTCAACGCTGATGCGTCTACTGCACATCTCACCTTGCTACAGGCACTTTTTGa                    <  2:798164/142‑1 (MQ=255)                                                                                                                      aCCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCGATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTCCAGGCACTTTTTGa                    >  1:236869/1‑143 (MQ=255)                                                                                                                         cGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttc                                                                           <  2:1416‑M2/85‑69 (MQ=255)                                                                                                                         cGCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttc                                                                           >  1:1416‑M2/1‑17 (MQ=255)                                                                                                                         cGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGGATTGTTTTATAc                 >  2:223170/1‑143 (MQ=255)                                                                                                                         cGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATAc                 >  1:574381/1‑143 (MQ=255)                                                                                                                          gCTCCTCGATAGACTCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACa                <  2:644781/143‑1 (MQ=255)                                                                                                                          gCTCCTCGATAGAATCaggagcgggtattggtataagtgacggtagccttaccctgttcgttcgtcacggcttgaccgccgttcgtcatttcggctgtcgctgcgttgctggtgaagttcacagtcacacctttcaccggaca                <  2:541828‑M2/143‑128 (MQ=255)                                                                                                                                cGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTCTCGCTACAGTCTcc          >  2:766800/1‑143 (MQ=255)                                                                                                                                      aaTCAGGAGCGAGACCGGATAACCCTTTTGCCATTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGAAGCGTCTACGGCACATCTCACCTTGCTACAGGCACTCATTGATACAGCCTCCGCAGGc    >  2:826774/1‑143 (MQ=255)                                                                                                                                       agcAGGAGCGAGGCCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACAGTCTCCGCAGGCg   <  2:535000/141‑1 (MQ=255)                                                                                                                                       aTCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACAGTCTCCGCAGGCg   >  1:558982/1‑143 (MQ=255)                                                                                                                                        tCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACAGTCTCCGCAGGCga  >  1:36564/1‑143 (MQ=255)                                                                                                                                        tCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACAGTCTCCGCAGGCga  <  1:235572/143‑1 (MQ=255)                                                                                                                                         |                                                                                                                                              TTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAACAGGGTAAGGCTACCGTCACTTATACCAATACCCGCTCCTCGATAGAATCAGGAGCGAGACCGGATACCGTTGAGGCCAGTCTGGAAAATGGTAGCTCCACGCTTAGCACATCAATTAATGTCAACGCTGATGCGTCTACGGCACATCTCACCTTGCTACAGGCACTTTTTGATACAGTCTCCGCAGGCGA  >  NC_000913/2048778‑2049055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.