New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2529006 =	46 (0.970)	3 (0.070)	3/252	NT	6.4%	coding (1171/2016 nt)	ligA	DNA ligase
	?	NC_000913	2529035 =	44 (0.970)					coding (1142/2016 nt)	ligA	DNA ligase

TCTTTACGCTGCGCACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTC  >  NC_000913/2528864‑2529147                                                                                                                                               |                                                                                                                                               tctTTACGCTGCGCACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCac                                                                                                                                                <  1:199210/143‑1 (MQ=255)  ctTTACGCTGCGCACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGCAAGCacg                                                                                                                                               >  1:742280/1‑143 (MQ=255)    ttACGCTGCGCACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACACTGCGTCGGGAATACAACCTCACGGGTGTATTACGGGCGTCAAGAacgaacgag                                                                                                                                             >  2:636733/1‑142 (MQ=255)    tctcgcgGCGCCCCCCGATTCAGGCCTCCGGTACAGCGGGCCACCGCTTGACCTTCCACTCGCTCAACGTGAGACCCACATACCGGTCAATGCGTCGGGAATACAACCGCACGGGTATCTTCGGGGCGTTCAGAAAGCacgac                                                                                                                                             <  2:491642/140‑1 (MQ=255)      gcgcctacgcctgttgcgcgtctggatcctggccatgttgcaggcgtgctggtgagtaacgcaaccttacacaatgcggatgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgctggCGACGt                                                                                                                                           >  1:115832‑M1/138‑143 (MQ=255)         cTGCGCACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTGCACCTTCCACACGCTCAACATCCGAACCACATACCGCCCAACGCGCCGGGAATACAACCCCACCGCAGACTGCCGGGCGTTCCGACAGCCCGCCGttca                                                                                                                                        >  2:659582/1‑141 (MQ=255)          ggcgcACCGCAAAGCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAac                                                                                                                                       <  1:257232/142‑1 (MQ=255)           gcgcACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGACTACAACCTCACGGGTATCTTCCGGGCGTTCAGCAAGCACGACGTTAacc                                                                                                                                      >  1:219304/1‑143 (MQ=255)             gcACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGCCGTTAaccac                                                                                                                                    >  1:244114/1‑143 (MQ=255)                  gCAACTCAGGCCACCGGTACAGCCGGCAGCCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCg                                                                                                                               <  2:584865/143‑1 (MQ=255)                   cagaTCAGGCCACCGGCACAGCCGGCAACCGCTTCACCTTCCACCCGCTCCACGCCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCgg                                                                                                                              <  2:254213/140‑1 (MQ=255)                   cAAATCAGGCCACCGGCACAGCGGCCAACCGCTTCACCTTCCACACCCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCgg                                                                                                                              <  1:152836/143‑1 (MQ=255)                            ccAGCGGTACAGCGGGCAACCGCTTCACCTTCCACGCGCTCGACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTc                                                                                                                     <  2:205344/143‑1 (MQ=255)                            ccACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTc                                                                                                                     >  1:156895/1‑143 (MQ=255)                            ccACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTCCAGAAAGCACGACGTTAACCACCTGCGGGATCACgcc                                                                                                                     >  2:57423/1‑141 (MQ=255)                              aCCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGc                                                                                                                   >  1:291840/1‑143 (MQ=255)                               aacctgtccatgttgcaggcgtgctggtgagtaacgcaaccttacacaatgcggatgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgctggCGACGTTAACCACCTGCGGGATCACGTCGcc                                                                                                                  >  1:615743‑M1/113‑143 (MQ=255)                                      aGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCgcgg                                                                                                           >  1:383563/1‑143 (MQ=255)                                       gcaggCAACCGCCACAACGCCGACACGCGCAGCGTCGGAACCACATCCCGCACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCgcggc                                                                                                          <  1:112993/140‑1 (MQ=255)                                        cGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTAGCcggcgcggcg                                                                                                         >  1:198359/1‑143 (MQ=255)                                           gCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAAACACCTGCGGGAGCACGTCGCCCGCGCGGCGCAt                                                                                                      >  2:519358/1‑143 (MQ=255)                                           gCAACCGCTTCACCTTCCACACGCTCAACGCCAGAACCACATACCGGACAATGCCCCGGGCATCCACCCACACACGGAGCCTCCGGTCGTTCCGAAAGCACGACGTTCACCACCTCCTGGACCACGTCGCACTCGCGGCGacc                                                                                                      >  2:920296/1‑141 (MQ=255)                                                cGCTGCACCTGCCGCGCGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTGCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATcacca                                                                                                 <  1:921561/143‑1 (MQ=255)                                                  cTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATcacca‑cg                                                                                              >  1:678120/1‑142 (MQ=255)                                                   ttCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGAGCACGTCGCCAGCGGGGCGAATCACCA‑Ctt                                                                                             >  1:295746/1‑143 (MQ=255)                                                    tCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTCCGGGATCACGTCGCCAGCGCGGCGCATCACCC‑Ctct                                                                                            >  2:131078/1‑141 (MQ=255)                                                       ccTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTACGGGCGTTCAGAAAGCACGACGTTAACCACCAGCGGGATCACGCCGCCAGCGCGACGCCTCACCA‑CACTATc                                                                                         >  2:149130/1‑143 (MQ=255)                                                                 gCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCCAAACACCC‑CTTTATCGCCAATCCgc                                                                               >  2:544113/1‑142 (MQ=255)                                                                   tCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAAGCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCCGGATCCCGTCGCCAGCGCGGCGAATCACCA‑CTCTCTCGCCACTGCgcac                                                                             >  2:652393/1‑140 (MQ=255)                                                                      aCGTCAGAACCACATACCGGACAATGCGTAGGGAATACAGCCGCACGGGAATCTTCCGGGCGTGCAGGAACCACGACGTTAACCACCGGCCGGATAACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCCAGGCGGaacac                                                                          >  2:433007/1‑140 (MQ=255)                                                                        gTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTCCGGGAACACGTCCTCAACGCCGCCAATCACCA‑CTTTATCGCCAATGCGTacatcga                                                                        >  2:104731/1‑137 (MQ=255)                                                                             aaCCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGt                                                                   >  1:111870/1‑143 (MQ=255)                                                                             aaCCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGt                                                                   >  1:546626/1‑143 (MQ=255)                                                                             aaCCACATACCGGACAATGCGTCGGGAATACAAACTCAAAGGAATCTTACGGGCGTTCAGAAAGCACGACGTTAACCAACTGCGGGATCACGTAGAAAACGCGGCGGATCACCA‑CTTTAGCGCCAATGCGGAAACCAAGACGt                                                                   >  1:348108/1‑143 (MQ=255)                                                                                cacaTACCGGACAATGCGTCGGGAATACAACCTCACGGGTAGCTTCCGGGCAATCAGAACTCACGACGATAACCACCCGCCGGATCACGTCGCCAGCGACGCAAATCACCACCTCAATCCCCAA‑GCGAAAAACAAGAAGTTCg                                                                >  2:307195/1‑143 (MQ=255)                                                                                      ccGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCATCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCa                                                          <  1:654062/143‑1 (MQ=255)                                                                                           tcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgctggCGACGTTAACCACCTGCGGGATCACGTc                                                                                                                     >  1:350060‑M1/53‑80 (MQ=255)                                                                                           tcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgctggCGACGTTAACCACCTGCGGGATCACGTc                                                                                                                     <  2:350060‑M1/28‑1 (MQ=255)                                                                                              tGCGTCGGGAATACAACCTCACGGGTATCTTCCAGACGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCCCCAATGCGTAAACCAAAACGTTCGATTTCATCCGCAtt                                                  >  1:485315/1‑143 (MQ=255)                                                                                              tGCCTCGGGACTACACCCTCCCGGGTATCTTCCGGCCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCAtt                                                  <  1:59530/143‑1 (MQ=255)                                                                                                  tCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAACCACGACGTTAACCACCTGCGGGAGCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCACGACGCTCGAATTCATCcacagcgtgc                                              >  2:15144/1‑137 (MQ=255)                                                                                                        aTACAACCCCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCCAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGtt                                        <  1:873766/143‑1 (MQ=255)                                                                                                         tACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGACTCCCCA‑CTTCACCGCCAATGCGTAAACCAAAACGTTCGATTTCATCCGCATCGCGTAACGTTg                                       >  1:534646/1‑143 (MQ=255)                                                                                                            aaCCTCACGGGTATCTTCCGGGCGTTCAGAATGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGt                                    <  2:517438/143‑1 (MQ=255)                                                                                                            aaCCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATATCATCCGCATTGTGTAAGGTTACgg                                    >  1:484376/1‑142 (MQ=255)                                                                                                              ccTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTa                                  <  1:865024/143‑1 (MQ=255)                                                                                                                    gggTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCAcc                            >  1:657128/1‑143 (MQ=255)                                                                                                                           ttCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCACTGCGTAAACCAAGACGTTCGATTTCATCCGCCTTGTGTAAGGTTGCGTTACTCACCAGCACGc                     >  1:107490/1‑143 (MQ=255)                                                                                                                           ttCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTAGCGTTACTCACCAGCACGc                     >  2:429279/1‑143 (MQ=255)                                                                                                                           tgccGGGCGTGCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAACCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGc                     <  2:169489/141‑1 (MQ=255)                                                                                                                           ctCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGc                     <  1:713624/142‑1 (MQ=255)                                                                                                                                    ttCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACGAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCCACAt            >  1:472505/1‑143 (MQ=255)                                                                                                                                     tCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATg           <  1:618129/143‑1 (MQ=255)                                                                                                                                        gaatacACGATGTTAACCACCTGCGGCATCACGTCGCCAGCGCGACGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGAc        <  2:350657/138‑1 (MQ=255)                                                                                                                                         aaaGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCCTTGCGTATACCAAAACATTCGATTACATCAGCATTATGTAAAGTTGCGTTACTCACCAGCACGCCTGCAACATGGACa       >  1:338042/1‑143 (MQ=255)                                                                                                                                             cACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGtt   <  1:57423/143‑1 (MQ=255)                                                                                                                                              acgacgTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCC‑CTTTATCGCCAATGCGTAAACCACGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACGTGGACAGGTTc  >  2:896370/1‑143 (MQ=255)                                                                                                                                              acgacgTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGCTTc  >  1:121935/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                               TCTTTACGCTGCGCACCGCAAATCAGGCCACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTC  >  NC_000913/2528864‑2529147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.