New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2529006 =	46 (0.970)	3 (0.070)	3/252	NT	6.4%	coding (1171/2016 nt)	ligA	DNA ligase
	?	NC_000913	2529035 =	44 (0.970)					coding (1142/2016 nt)	ligA	DNA ligase

ACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCAACAGGCGTAATCGCGCCAGT  >  NC_000913/2528893‑2529177                                                                                                                                               |                                                                                                                                                aCCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGc                                                                                                                                                 >  1:291840/1‑143 (MQ=255)  aacctgtccatgttgcaggcgtgctggtgagtaacgcaaccttacacaatgcggatgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgctggCGACGTTAACCACCTGCGGGATCACGTCGcc                                                                                                                                                >  1:615743‑M1/113‑143 (MQ=255)         aGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCgcgg                                                                                                                                         >  1:383563/1‑143 (MQ=255)          gcaggCAACCGCCACAACGCCGACACGCGCAGCGTCGGAACCACATCCCGCACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCgcggc                                                                                                                                        <  1:112993/140‑1 (MQ=255)           cGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTAGCcggcgcggcg                                                                                                                                       >  1:198359/1‑143 (MQ=255)              gCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAAACACCTGCGGGAGCACGTCGCCCGCGCGGCGCAt                                                                                                                                    >  2:519358/1‑143 (MQ=255)              gCAACCGCTTCACCTTCCACACGCTCAACGCCAGAACCACATACCGGACAATGCCCCGGGCATCCACCCACACACGGAGCCTCCGGTCGTTCCGAAAGCACGACGTTCACCACCTCCTGGACCACGTCGCACTCGCGGCGacc                                                                                                                                    >  2:920296/1‑141 (MQ=255)                   cGCTGCACCTGCCGCGCGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTGCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATcacca                                                                                                                               <  1:921561/143‑1 (MQ=255)                     cTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATcacca‑cg                                                                                                                            >  1:678120/1‑142 (MQ=255)                      ttCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGAGCACGTCGCCAGCGGGGCGAATCACCA‑Ctt                                                                                                                           >  1:295746/1‑143 (MQ=255)                       tCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTCCGGGATCACGTCGCCAGCGCGGCGCATCACCC‑Ctct                                                                                                                          >  2:131078/1‑141 (MQ=255)                          ccTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTACGGGCGTTCAGAAAGCACGACGTTAACCACCAGCGGGATCACGCCGCCAGCGCGACGCCTCACCA‑CACTATc                                                                                                                       >  2:149130/1‑143 (MQ=255)                                    gCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCCAAACACCC‑CTTTATCGCCAATCCgc                                                                                                             >  2:544113/1‑142 (MQ=255)                                      tCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAAGCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCCGGATCCCGTCGCCAGCGCGGCGAATCACCA‑CTCTCTCGCCACTGCgcac                                                                                                           >  2:652393/1‑140 (MQ=255)                                         aCGTCAGAACCACATACCGGACAATGCGTAGGGAATACAGCCGCACGGGAATCTTCCGGGCGTGCAGGAACCACGACGTTAACCACCGGCCGGATAACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCCAGGCGGaacac                                                                                                        >  2:433007/1‑140 (MQ=255)                                           gTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTCCGGGAACACGTCCTCAACGCCGCCAATCACCA‑CTTTATCGCCAATGCGTacatcga                                                                                                      >  2:104731/1‑137 (MQ=255)                                                aaCCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGt                                                                                                 >  1:111870/1‑143 (MQ=255)                                                aaCCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGt                                                                                                 >  1:546626/1‑143 (MQ=255)                                                aaCCACATACCGGACAATGCGTCGGGAATACAAACTCAAAGGAATCTTACGGGCGTTCAGAAAGCACGACGTTAACCAACTGCGGGATCACGTAGAAAACGCGGCGGATCACCA‑CTTTAGCGCCAATGCGGAAACCAAGACGt                                                                                                 >  1:348108/1‑143 (MQ=255)                                                   cacaTACCGGACAATGCGTCGGGAATACAACCTCACGGGTAGCTTCCGGGCAATCAGAACTCACGACGATAACCACCCGCCGGATCACGTCGCCAGCGACGCAAATCACCACCTCAATCCCCAA‑GCGAAAAACAAGAAGTTCg                                                                                              >  2:307195/1‑143 (MQ=255)                                                         ccGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCATCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCa                                                                                        <  1:654062/143‑1 (MQ=255)                                                                 tGCGTCGGGAATACAACCTCACGGGTATCTTCCAGACGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCCCCAATGCGTAAACCAAAACGTTCGATTTCATCCGCAtt                                                                                >  1:485315/1‑143 (MQ=255)                                                                 tGCCTCGGGACTACACCCTCCCGGGTATCTTCCGGCCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCAtt                                                                                <  1:59530/143‑1 (MQ=255)                                                                     tCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAACCACGACGTTAACCACCTGCGGGAGCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCACGACGCTCGAATTCATCcacagcgtgc                                                                            >  2:15144/1‑137 (MQ=255)                                                                           aTACAACCCCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCCAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGtt                                                                      <  1:873766/143‑1 (MQ=255)                                                                            tACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGACTCCCCA‑CTTCACCGCCAATGCGTAAACCAAAACGTTCGATTTCATCCGCATCGCGTAACGTTg                                                                     >  1:534646/1‑143 (MQ=255)                                                                               aaCCTCACGGGTATCTTCCGGGCGTTCAGAATGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGt                                                                  <  2:517438/143‑1 (MQ=255)                                                                               aaCCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATATCATCCGCATTGTGTAAGGTTACgg                                                                  >  1:484376/1‑142 (MQ=255)                                                                                 ccTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTa                                                                <  1:865024/143‑1 (MQ=255)                                                                                       gggTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCAcc                                                          >  1:657128/1‑143 (MQ=255)                                                                                              ttCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCACTGCGTAAACCAAGACGTTCGATTTCATCCGCCTTGTGTAAGGTTGCGTTACTCACCAGCACGc                                                   >  1:107490/1‑143 (MQ=255)                                                                                              ttCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTAGCGTTACTCACCAGCACGc                                                   >  2:429279/1‑143 (MQ=255)                                                                                              tgccGGGCGTGCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAACCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGc                                                   <  2:169489/141‑1 (MQ=255)                                                                                              ctCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGc                                                   <  1:713624/142‑1 (MQ=255)                                                                                                       ttCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACGAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCCACAt                                          >  1:472505/1‑143 (MQ=255)                                                                                                        tCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATg                                         <  1:618129/143‑1 (MQ=255)                                                                                                           gaatacACGATGTTAACCACCTGCGGCATCACGTCGCCAGCGCGACGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGAc                                      <  2:350657/138‑1 (MQ=255)                                                                                                            aaaGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCCTTGCGTATACCAAAACATTCGATTACATCAGCATTATGTAAAGTTGCGTTACTCACCAGCACGCCTGCAACATGGACa                                     >  1:338042/1‑143 (MQ=255)                                                                                                                ggcgacgtgatcccgcaggtggttaacgtcgCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGtt                                 >  1:615743‑M2/32‑143 (MQ=255)                                                                                                                cACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGtt                                 <  1:57423/143‑1 (MQ=255)                                                                                                                 acgacgTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCC‑CTTTATCGCCAATGCGTAAACCACGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACGTGGACAGGTTc                                >  2:896370/1‑143 (MQ=255)                                                                                                                 acgacgTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGCTTc                                >  1:121935/1‑143 (MQ=255)                                                                                                                   gacgtgatcccgcaggtggttaacgtcgCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGa                                                                                             >  1:350060‑M2/29‑80 (MQ=255)                                                                                                                   gacgtgatcccgcaggtggttaacgtcgCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGa                                                                                             <  2:350060‑M2/52‑1 (MQ=255)                                                                                                                     CGTTAACCACCTGCGGGATCACGTCGCCCGCGGCGCTAAACCCCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGCGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGggtcccga                            <  2:289504‑M1/143‑4 (MQ=255)                                                                                                                      GTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGAc                           <  2:83162‑M1/143‑1 (MQ=255)                                                                                                                          accaccTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACgcgc                       <  1:20169/143‑1 (MQ=255)                                                                                                                               cTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTACAACATGGACAGGTTCCAGACGCGCAACAg                  >  2:752953/1‑143 (MQ=255)                                                                                                                                tGCGGGATCACGTCGCGAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCCGCACGCCTGCAACATGGGCAGGTTCCAGACGCGCacccgg                 >  1:407950/1‑138 (MQ=255)                                                                                                                                 gccggATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCAACAGGc                <  2:156895/140‑1 (MQ=255)                                                                                                                                   gggATCACGTCGCCATCGCGGCGAATCACCA‑CCTTATCGCCAATGCGTAAACCAAGGCGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCAACAGGCGt              <  1:519358/143‑1 (MQ=255)                                                                                                                                   gggATCACGTCGCCAGCGCGGCGAATCCCCA‑CTTTACCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCAACAGGCGt              <  2:125360/143‑1 (MQ=255)                                                                                                                                    ggATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGACTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGATCCAGACGCGCAACAGGCGTa             >  2:113620/1‑143 (MQ=255)                                                                                                                                    ggATCACGTCGCCAGCCCGCCGACTCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTACGGTTGCGTGACTCACCAGCACGCCTGCAGCATGGACGGGTTCCAGACGCGCAACAGGCgca             >  2:631728/1‑141 (MQ=255)                                                                                                                                         acgtcgCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGCCAGGATCCAGACGCGCAACAggcgtaggcgc        >  1:115832‑M2/7‑138 (MQ=255)                                                                                                                                               ccAGCGCCGCGAATCACCA‑CTTTATCGCCAATGCGTAACCCAAGACGGTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGTTTCCAGACGCGCAACAGGCGTAATCGCGCCAGt  <  1:153198/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                ACCGGTACAGCGGGCAACCGCTTCACCTTCCACACGCTCAACGTCAGAACCACATACCGGACAATGCGTCGGGAATACAACCTCACGGGTATCTTCCGGGCGTTCAGAAAGCACGACGTTAACCACCTGCGGGATCACGTCGCCAGCGCGGCGAATCACCA‑CTTTATCGCCAATGCGTAAACCAAGACGTTCGATTTCATCCGCATTGTGTAAGGTTGCGTTACTCACCAGCACGCCTGCAACATGGACAGGTTCCAGACGCGCAACAGGCGTAATCGCGCCAGT  >  NC_000913/2528893‑2529177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.