New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3977430	47 (0.990)	3 (0.070)	3/250	NT	6.3%	coding (1153/1251 nt)	wzxE	lipid III flippase
	?	NC_000913	= 3977447	45 (1.000)					coding (1170/1251 nt)	wzxE	lipid III flippase

GGGTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATAAC  >  NC_000913/3977294‑3977572                                                                                                                                         |                                                                                                                                               gggTGAGGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTg                                                                                                                                          <  1:142928/143‑1 (MQ=255)   gTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCa                                                                                                                                        <  1:799988/143‑1 (MQ=255)     gATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCaat                                                                                                                                      >  1:812795/1‑141 (MQ=255)     gATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACt                                                                                                                                      >  1:610084/1‑143 (MQ=255)     gATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGACAAAGAGTCACTGCGGATTTATATTCTAGCGGAAGTCAGCCAGGTCACTTTATTGATGGTATTTGCCCACTGGCTAATCACTGCGCATGGTGCACt                                                                                                                                      >  1:620244/1‑143 (MQ=255)           ttgagaGTGGGCGCTTATGTCGTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGggcgc                                                                                                                                <  1:93389/138‑1 (MQ=255)           ttAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCCGGTAGAGAATCTGTTAGATTTCTGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGggcgc                                                                                                                                >  2:919937/1‑143 (MQ=255)              aaaGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCCCTGGCTAATCCCTGCGCATGGTGCACTGAGCGCGga                                                                                                                             <  1:443386‑M2/143‑3 (MQ=255)                aGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGgcgc                                                                                                                           >  1:64279‑M2/1‑139 (MQ=255)                   gggCGCTTATGTCTTGGGTTACCCGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCcgcgcccagtgcaccatgcgcagg                                                                                                                        <  1:529845‑M1/143‑25 (MQ=255)                     gcgcTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTAGATTCTGGCGGCAGTCCGCCGGTTCCCTTTATTGATGGTATTTGCCGACTGGCTAATCGCTGCGCATGGTGCGCTGGGAGGGgcgcaagga                                                                                                                      <  1:807812‑M2/143‑10 (MQ=255)                     gcgcTTATGTCTTTGGTGATCTGCTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCa                                                                                                                      <  1:426733/143‑1 (MQ=255)                         ttctggcTTTGGTTATTTGGTGACCTCCAAACCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCatata                                                                                                                  <  2:845000/137‑1 (MQ=255)                            tgtgTTTGGTTATCTGGGGGGCGCGAGAGCGTGGCTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCGCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATgg                                                                                                               <  2:261646/143‑1 (MQ=255)                            tgtgTTTGGTGATCTGGTGATCGCCAAAGCGTCACTGCGGTTTGATATTCGGGGGGAAGTCAGCCAGTTCACGCTATGGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATgg                                                                                                               <  1:208222/143‑1 (MQ=255)                                         cTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGt                                                                                                  >  1:149553/1‑143 (MQ=255)                                              gctCGCGAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATGTCGTCTAtc                                                                                             >  2:720470/3‑142 (MQ=255)                                              gATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCCCAGGCATATGTGGCAACTTATATCGTCTAtt                                                                                             >  1:473854/1‑143 (MQ=255)                                                 cGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTACACCGTCTAttttt                                                                                          >  2:135749/1‑143 (MQ=255)                                                  gCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACGTATATCGTCTATTTTtc                                                                                         >  2:98503/1‑143 (MQ=255)                                                   ccACAGCGTCACTGCGGTTTTCTATTCTGGCGGAAGTCAGCTAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTtct                                                                                        <  2:482211/143‑1 (MQ=255)                                                   ccAAAGCGTCACTGCGGTTTTATCTTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTtct                                                                                        <  1:54201/143‑1 (MQ=255)                                                     aaaGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTctct                                                                                      >  1:927244/1‑143 (MQ=255)                                                               ggCGGTTTTTTATTCTGGCGGAAGTCAGCCAGTTCACCTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGTACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGc                                                                            <  2:449206/142‑1 (MQ=255)                                                                  ggTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCGTGGTGCACTAGGCGCGGCGCAGGCATATATGGCAACTTAGCTCGTCTATGTGTCTGTTTGTTGTGGCgtg                                                                         >  2:594057/1‑143 (MQ=255)                                                                    ttttATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTCATATCGTCTATTTTTCTCTTTGTTGTGGCGTGtt                                                                       >  1:38043/1‑143 (MQ=255)                                                                      ttATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCCGGCATACATGGCAACTGATATCGCCCATTGTTCTCTCTGTTGTGGCGTGtttt                                                                     >  2:369295/1‑143 (MQ=255)                                                                           ttCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTActc                                                                <  1:309914/143‑1 (MQ=255)                                                                           ttCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAAATTCTATCGTCTAATTTTCTCTTTGTTGTGGCGTGTTTTTActc                                                                >  1:637635/1‑143 (MQ=255)                                                                            tCTGGCGGAAGTCAGCCAGTTCCCTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTActct                                                               <  2:703230/143‑1 (MQ=255)                                                                             cTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATACATGGCAACTAATATCGTCTCTTATACCCTGTGTCGTGGCGTGGTTTAAGTCTg                                                              >  2:35187/1‑143 (MQ=255)                                                                               tgCGGTAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGc                                                            <  1:425493/142‑1 (MQ=255)                                                                               ggCGGAAGTCGGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAAGCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGc                                                            <  1:5582/143‑1 (MQ=255)                                                                                gCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTCCTCTGGCg                                                           >  1:84825/1‑143 (MQ=255)                                                                                gCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTCTGATGTGGCGTGCTGTTCCTCTGGCg                                                           >  1:386754/1‑143 (MQ=255)                                                                                 cGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCcacgcccagtgcaccatgcgcaggg                                                                                                                       <  2:821711‑M1/82‑26 (MQ=255)                                                                                 cGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCcacgcccagtgcaccatgcgcaggg                                                                                                                       >  1:821711‑M1/1‑57 (MQ=255)                                                                                 cGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGAGt                                                          >  1:694996/1‑143 (MQ=255)                                                                                     aGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCTGGCATATATGGCAACTTATAGCGTCTATTCTTCTCTTGGTTGTGGCGCGATTTTACTCTAGCGTAGGc                                                      >  2:764737/1‑143 (MQ=255)                                                                                         aGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCCTCGGCGGGc                                                  >  1:579499/1‑143 (MQ=255)                                                                                                   cttttctGATGGTATGTGCCCACAGGCGAAGCGCTGCGCACGGTGCACGGGGCGCGGCGCAGGCATATCTGGCAACTTATGTCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTAc                                        <  1:41517/137‑1 (MQ=255)                                                                                                     ttATTGATGGTATTTGCCCACTGGCTCATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTg                                      <  1:483106/143‑1 (MQ=255)                                                                                                     ttATTGATGGTATTTGCCCACGGGCTAATTCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTg                                      <  1:483449/143‑1 (MQ=255)                                                                                                           ttGGTTTTTTCGCACTGGCTTATCCCTGCGCAGGGTGCACTGTGTGCGGCGCAGGCATATATGGCAACGTATAGCGTCTAGTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCAc                                <  2:345398/142‑1 (MQ=255)                                                                                                           aTGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTCGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGGTTCAc                                >  2:912007/1‑143 (MQ=255)                                                                                                            tGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGCTTCACg                               >  1:385349/1‑143 (MQ=255)                                                                                                                    gCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCCATTTTTCTCTCTGTTGTGGCGTGTTTTAACTCCGGCGTAGGCGGGCACGCCTGTACTGATCCACGtccccggg                       >  2:654358/1‑136 (MQ=255)                                                                                                                     cccACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTCCTGATTCACGTACTggggt                      >  1:66501/1‑141 (MQ=255)                                                                                                                      ccACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCACATATGGCAACTTATATCGTCCATTTTTCTCTTTGTTGTGGCGTGTTTTTACCCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGAATc                     >  2:713772/1‑143 (MQ=255)                                                                                                                        aCTGGCTAATCCCTGCGCTTGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTAGTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCgg                   <  2:443689/143‑1 (MQ=255)                                                                                                                            gCTAATCCCTGCGCATGGTGCACGGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGatat               <  1:135749/143‑1 (MQ=255)                                                                                                                              tAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATcc             >  2:779544/1‑143 (MQ=255)                                                                                                                              tAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTGTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTGCTGGGATCGGATATcc             >  1:547284/1‑143 (MQ=255)                                                                                                                                 tCCTTGCGCccctcccagcgcaccatgcgcagcgattagccagtcggcaaataccatcaataaagggaaccggcggactgccgccagaatctaaaaccgcagtgacgctttggcgatcaccagataaccaaagacataagcgc          <  1:807812‑M1/143‑135 (MQ=255)                                                                                                                                  cccTGCGCATGGTGCACTGGGCGTGgcgcagggattagccagtgggcaaataccatcaataaagtgaactggctgacttccg                                                                      >  1:821711‑M2/1‑25 (MQ=255)                                                                                                                                  cccTGCGCATGGTGCACTGGGCGTGgcgcagggattagccagtgggcaaataccatcaataaagtgaactggctgacttccg                                                                      <  2:821711‑M2/82‑58 (MQ=255)                                                                                                                                   ccTGCGCATGGTGCACTGGGCGCGgcgcagggattagccagtgggcaaataccatcaataaagtgaactggctgacttccgccagaatataaaaccgcagtgacgctttggcgatcaccgggtaacccaagacataagcgccc        <  1:529845‑M2/143‑120 (MQ=255)                                                                                                                                      gcgccgcgcccagtgcaccatgcgcagggattagccagtgggcaaataccatcaataaagtgaactggctgacttccgccagaatataaaaccgcagtgacgctttggcgatcaccagataaccaaagacataagcgcccact     >  1:64279‑M1/1‑4 (MQ=255)                                                                                                                                        tccgcgctcagtgcaccatgcgcagggattagccagggggcaaataccatcaataaagtgaactggctgacttccgccagaatataaaaccgcagtgacgctttggcgatcaccagataaccaaagacataagcgcccacttt   <  1:443386‑M1/142‑142 (MQ=255)                                                                                                                                         cATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATaac  <  2:473854/143‑1 (MQ=255)                                                                                                                                         |                                                                                                                                               GGGTGATGTGTTAAAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATAAC  >  NC_000913/3977294‑3977572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.