| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3977430 | 47 (0.990) | 3 (0.070) | 3/250 | NT | 6.3% | coding (1153/1251 nt) | wzxE | lipid III flippase |
| ? | NC_000913 | = 3977447 | 45 (1.000) | coding (1170/1251 nt) | wzxE | lipid III flippase | |||||
AAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATAACCGAACCGTTTTGCGG > NC_000913/3977307‑3977587 | aaaGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCCCTGGCTAATCCCTGCGCATGGTGCACTGAGCGCGga < 1:443386‑M2/143‑3 (MQ=255) aGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGgcgc > 1:64279‑M2/1‑139 (MQ=255) gcgcTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTAGATTCTGGCGGCAGTCCGCCGGTTCCCTTTATTGATGGTATTTGCCGACTGGCTAATCGCTGCGCATGGTGCGCTGGGAGGGgcgcaagga < 1:807812‑M2/143‑10 (MQ=255) gcgcTTATGTCTTTGGTGATCTGCTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCa < 1:426733/143‑1 (MQ=255) ttctggcTTTGGTTATTTGGTGACCTCCAAACCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCatata < 2:845000/137‑1 (MQ=255) tgtgTTTGGTTATCTGGGGGGCGCGAGAGCGTGGCTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCGCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATgg < 2:261646/143‑1 (MQ=255) tgtgTTTGGTGATCTGGTGATCGCCAAAGCGTCACTGCGGTTTGATATTCGGGGGGAAGTCAGCCAGTTCACGCTATGGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATgg < 1:208222/143‑1 (MQ=255) cTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGt > 1:149553/1‑143 (MQ=255) gctCGCGAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATGTCGTCTAtc > 2:720470/3‑142 (MQ=255) gATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCCCAGGCATATGTGGCAACTTATATCGTCTAtt > 1:473854/1‑143 (MQ=255) cGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTACACCGTCTAttttt > 2:135749/1‑143 (MQ=255) gCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACGTATATCGTCTATTTTtc > 2:98503/1‑143 (MQ=255) ccACAGCGTCACTGCGGTTTTCTATTCTGGCGGAAGTCAGCTAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTtct < 2:482211/143‑1 (MQ=255) ccAAAGCGTCACTGCGGTTTTATCTTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTtct < 1:54201/143‑1 (MQ=255) aaaGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTctct > 1:927244/1‑143 (MQ=255) ggCGGTTTTTTATTCTGGCGGAAGTCAGCCAGTTCACCTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGTACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGc < 2:449206/142‑1 (MQ=255) ggTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCGTGGTGCACTAGGCGCGGCGCAGGCATATATGGCAACTTAGCTCGTCTATGTGTCTGTTTGTTGTGGCgtg > 2:594057/1‑143 (MQ=255) ttttATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTCATATCGTCTATTTTTCTCTTTGTTGTGGCGTGtt > 1:38043/1‑143 (MQ=255) ttATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCCGGCATACATGGCAACTGATATCGCCCATTGTTCTCTCTGTTGTGGCGTGtttt > 2:369295/1‑143 (MQ=255) ttCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTActc < 1:309914/143‑1 (MQ=255) ttCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAAATTCTATCGTCTAATTTTCTCTTTGTTGTGGCGTGTTTTTActc > 1:637635/1‑143 (MQ=255) tCTGGCGGAAGTCAGCCAGTTCCCTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTActct < 2:703230/143‑1 (MQ=255) cTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATACATGGCAACTAATATCGTCTCTTATACCCTGTGTCGTGGCGTGGTTTAAGTCTg > 2:35187/1‑143 (MQ=255) tgCGGTAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGc < 1:425493/142‑1 (MQ=255) ggCGGAAGTCGGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAAGCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGc < 1:5582/143‑1 (MQ=255) gCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTCCTCTGGCg > 1:84825/1‑143 (MQ=255) gCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTCTGATGTGGCGTGCTGTTCCTCTGGCg > 1:386754/1‑143 (MQ=255) cGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGAGt > 1:694996/1‑143 (MQ=255) aGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCTGGCATATATGGCAACTTATAGCGTCTATTCTTCTCTTGGTTGTGGCGCGATTTTACTCTAGCGTAGGc > 2:764737/1‑143 (MQ=255) aGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCCTCGGCGGGc > 1:579499/1‑143 (MQ=255) cttttctGATGGTATGTGCCCACAGGCGAAGCGCTGCGCACGGTGCACGGGGCGCGGCGCAGGCATATCTGGCAACTTATGTCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTAc < 1:41517/137‑1 (MQ=255) ttATTGATGGTATTTGCCCACTGGCTCATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTg < 1:483106/143‑1 (MQ=255) ttATTGATGGTATTTGCCCACGGGCTAATTCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTg < 1:483449/143‑1 (MQ=255) ttGGTTTTTTCGCACTGGCTTATCCCTGCGCAGGGTGCACTGTGTGCGGCGCAGGCATATATGGCAACGTATAGCGTCTAGTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCAc < 2:345398/142‑1 (MQ=255) aTGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTCGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGGTTCAc > 2:912007/1‑143 (MQ=255) tGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGCTTCACg > 1:385349/1‑143 (MQ=255) gCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCCATTTTTCTCTCTGTTGTGGCGTGTTTTAACTCCGGCGTAGGCGGGCACGCCTGTACTGATCCACGtccccggg > 2:654358/1‑136 (MQ=255) cccACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTCCTGATTCACGTACTggggt > 1:66501/1‑141 (MQ=255) ccACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCACATATGGCAACTTATATCGTCCATTTTTCTCTTTGTTGTGGCGTGTTTTTACCCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGAATc > 2:713772/1‑143 (MQ=255) aCTGGCTAATCCCTGCGCTTGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTAGTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCgg < 2:443689/143‑1 (MQ=255) gCTAATCCCTGCGCATGGTGCACGGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGatat < 1:135749/143‑1 (MQ=255) tAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATcc > 2:779544/1‑143 (MQ=255) tAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTGTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTGCTGGGATCGGATATcc > 1:547284/1‑143 (MQ=255) cccTGCGCATGGTGCACTGGGCGTGgcgcagggattagccagtgggcaaataccatcaataaagtgaactggctgacttccg > 1:821711‑M2/1‑25 (MQ=255) cccTGCGCATGGTGCACTGGGCGTGgcgcagggattagccagtgggcaaataccatcaataaagtgaactggctgacttccg < 2:821711‑M2/82‑58 (MQ=255) ccTGCGCATGGTGCACTGGGCGCGgcgcagggattagccagtgggcaaataccatcaataaagtgaactggctgacttccgccagaatataaaaccgcagtgacgctttggcgatcaccgggtaacccaagacataagcgccc < 1:529845‑M2/143‑120 (MQ=255) cATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATaac < 2:473854/143‑1 (MQ=255) gTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATCTCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTACGCGGGCATGACTGTACTGATTCCCGTGCATGGCTCGGATATCCCTCACCATcaccgca > 2:859685/1‑141 (MQ=255) tGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCCTGACTGTCCTGATTCCCGTACTGGGACCGGATATCCCTCACCATaaccgaac > 2:652408/1‑143 (MQ=255) tGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATaaccgacc > 2:651285/1‑141 (MQ=255) aCTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATAACCGAACCGt > 1:612704/1‑143 (MQ=255) gggCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACGCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATATCCGAACCGtttt < 1:867301/143‑1 (MQ=255) cgcggcgcAGGCATATATGGCCTCTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTGACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATAACCGAACCGTTTTGCg < 1:471661/143‑1 (MQ=255) gcggcgcAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATAACCGAACCGTTTTGCgg < 2:637635/143‑1 (MQ=255) gcggcgcAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGATGTGGCGTGTGTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATGACCGAACCGTTTTGCgg > 1:140352/1‑143 (MQ=255) | AAAGTGGGCGCTTATGTCTTTGGTTATCTGGTGATCGCCAAAGCGTCACTGCGGTTTTATATTCTGGCGGAAGTCAGCCAGTTCACTTTATTGATGGTATTTGCCCACTGGCTAATCCCTGCGCATGGTGCACTGGGCGCGGCGCAGGCATATATGGCAACTTATATCGTCTATTTTTCTCTTTGTTGTGGCGTGTTTTTACTCTGGCGTAGGCGGGCATGACTGTACTGATTCACGTACTGGGATCGGATATCCCTCACCATAACCGAACCGTTTTGCGG > NC_000913/3977307‑3977587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |