| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168341 | 18 (0.380) | 3 (0.070) | 3/244 | NT | 14.8% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 18 (0.410) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu | |||||
ACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAA > NC_000913/4168200‑4168482 | accttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAata > 2:433791/1‑143 (MQ=255) aaaGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACg < 2:88012/143‑1 (MQ=39) gCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGGTCGCTTGCTATTAATGAAAGCTCACCCTACACGAAAACATCACGCAAcgc > 2:789465/1‑143 (MQ=255) gTACTTTGTAGTGCTCACACAGATTGTCTGATAGAACGTGAAGGTCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCCAGTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGt < 2:162251/143‑1 (MQ=11) gctctGTAGTGCTTACACTGTTTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACTCGTTGGGAGTGAGGCTGAAGCGAATCAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGa < 2:496792/139‑1 (MQ=14) aCTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGa < 1:530956/143‑1 (MQ=40) tttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCCAGCAACGCGTGATa > 2:337899/1‑143 (MQ=255) tttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCGTTGCGTGATa < 2:105459/143‑1 (MQ=255) tttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATa > 2:886867/1‑143 (MQ=40) tGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCGGGCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAg < 1:80092/143‑1 (MQ=255) gTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAac < 2:699207‑M2/143‑3 (MQ=255) cTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAatttt < 1:663152‑M2/143‑6 (MQ=255) tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttc < 2:431182‑M1/143‑29 (MQ=255) tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttc > 2:587487‑M2/1‑137 (MQ=255) cacacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAGGAAAGCTCACCCTACACGAAAATATCCCGCAACGCGAGATGAGCAgttttcg < 2:689231‑M2/143‑8 (MQ=255) gcacagATTGTCTGATGGAAAGTGAACAGCAAGGCGTTGACGCGGTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt > 2:58100‑M2/2‑135 (MQ=255) acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt < 1:353775‑M2/143‑9 (MQ=255) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgt > 1:487787‑M2/1‑133 (MQ=255) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGAGATAAGCAattttcgtat < 2:1719‑M2/143‑11 (MQ=255) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTCCACGAAAATATCACGCAACACGTGATAAGCCatattcgcgt < 2:538451‑M2/143‑11 (MQ=255) acaGAGTGTCTGAGAGAAAGTGAAAAGCAAGGCGTTTACGCGGTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAACGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgt < 2:694968‑M1/143‑33 (MQ=255) gATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagg < 2:400725‑M1/143‑36 (MQ=255) cTGAGAGAGAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGt < 2:655912/143‑1 (MQ=21) tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGAGAGGCTGAAGAGAATAAGGCCGTTCGGTAGCTATTAATGAAAGCGCACCCTAACCGAAAATATAAAGCAACGCGAGAGTAGCAATATTCGAGCACCCTACGTc > 2:279705/1‑143 (MQ=11) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCGATTTTCGTGTCCCCTTCGTCTagag > 1:30052/1‑143 (MQ=18) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTcgac > 1:288679/1‑142 (MQ=18) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGCAGTGAAGCTGACGACAATAAGCCCGATCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag < 2:347960/143‑1 (MQ=11) aacagaCTAAGGCCCTTCTCCTTCTACTAATGAAAGCTCGCACTCCACGCCAATATCACGCAACGCGTGATAAGGAATTTTCGTGTCCCGTTCGTCTAGAGGCCCAGGACAGCGCCCTTTCACGGCGGTAACAGGGGTTCGaa < 1:788465/140‑1 (MQ=1) ggtcGTCCGCTTTCTATGAATCAAAGCCCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGCGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAggg < 1:2353/140‑1 (MQ=1) cgttttCGATTAATGAAAGCCCACCCTCCGCGAAAATATCATGCCACGCGTGATACGCAATTTTCGTGTCCCCTTCGTCTAGCGGGCCAGGACACCGCACTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCa < 2:681571/140‑1 (MQ=1) gccttCTATTAATGAAAGCTCTCCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCAc < 1:507082/140‑1 (MQ=1) ccTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatc < 2:400725‑M2/143‑109 (MQ=255) atacgaAAATtgcttatctcgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgt < 2:1719‑M1/141‑134 (MQ=255) acgcgaaTATggcttatcacgtgttgcgtgatattttcgtggagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtagacgccttgcttttcactttctatcagacaatctgt < 2:538451‑M1/140‑134 (MQ=255) acacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgt > 1:487787‑M1/1‑10 (MQ=255) acacGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagcgttcattaatagaaagcgaacggccttattctcttcagcctcactcccaccgcgtaaacgccttgcttttcactttctctcagacactctgt < 2:694968‑M2/143‑112 (MQ=255) acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaccgcgtcaacgccttgctgttcactttccatcagacaatctgtgc > 2:58100‑M1/1‑8 (MQ=255) acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgt < 1:353775‑M1/143‑136 (MQ=255) cGAAAACtgctcatctcgcgttgcgggatattttcgtgtagggtgagctttccttaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtg < 2:689231‑M1/143‑137 (MQ=255) gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtga > 2:587487‑M1/1‑6 (MQ=255) gAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtga < 2:431182‑M2/143‑116 (MQ=255) aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgag < 1:663152‑M1/143‑139 (MQ=255) gttgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgagcac < 2:699207‑M1/142‑142 (MQ=255) | ACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAA > NC_000913/4168200‑4168482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |