| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168341 | 18 (0.380) | 3 (0.070) | 3/244 | NT | 14.8% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 18 (0.410) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu | |||||
GTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCG > NC_000913/4168223‑4168502 | gTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAac < 2:699207‑M2/143‑3 (MQ=255) cTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAatttt < 1:663152‑M2/143‑6 (MQ=255) tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttc > 2:587487‑M2/1‑137 (MQ=255) cacacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAGGAAAGCTCACCCTACACGAAAATATCCCGCAACGCGAGATGAGCAgttttcg < 2:689231‑M2/143‑8 (MQ=255) gcacagATTGTCTGATGGAAAGTGAACAGCAAGGCGTTGACGCGGTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt > 2:58100‑M2/2‑135 (MQ=255) acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt < 1:353775‑M2/143‑9 (MQ=255) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgt > 1:487787‑M2/1‑133 (MQ=255) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGAGATAAGCAattttcgtat < 2:1719‑M2/143‑11 (MQ=255) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTCCACGAAAATATCACGCAACACGTGATAAGCCatattcgcgt < 2:538451‑M2/143‑11 (MQ=255) cTGAGAGAGAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGt < 2:655912/143‑1 (MQ=21) tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGAGAGGCTGAAGAGAATAAGGCCGTTCGGTAGCTATTAATGAAAGCGCACCCTAACCGAAAATATAAAGCAACGCGAGAGTAGCAATATTCGAGCACCCTACGTc > 2:279705/1‑143 (MQ=11) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCGATTTTCGTGTCCCCTTCGTCTagag > 1:30052/1‑143 (MQ=18) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTcgac > 1:288679/1‑142 (MQ=18) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGCAGTGAAGCTGACGACAATAAGCCCGATCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag < 2:347960/143‑1 (MQ=11) aacagaCTAAGGCCCTTCTCCTTCTACTAATGAAAGCTCGCACTCCACGCCAATATCACGCAACGCGTGATAAGGAATTTTCGTGTCCCGTTCGTCTAGAGGCCCAGGACAGCGCCCTTTCACGGCGGTAACAGGGGTTCGaa < 1:788465/140‑1 (MQ=1) ggtcGTCCGCTTTCTATGAATCAAAGCCCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGCGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAggg < 1:2353/140‑1 (MQ=1) cgttttCGATTAATGAAAGCCCACCCTCCGCGAAAATATCATGCCACGCGTGATACGCAATTTTCGTGTCCCCTTCGTCTAGCGGGCCAGGACACCGCACTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCa < 2:681571/140‑1 (MQ=1) gccttCTATTAATGAAAGCTCTCCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCAc < 1:507082/140‑1 (MQ=1) ccTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatc < 2:400725‑M2/143‑109 (MQ=255) acacGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagcgttcattaatagaaagcgaacggccttattctcttcagcctcactcccaccgcgtaaacgccttgcttttcactttctctcagacactctgt < 2:694968‑M2/143‑112 (MQ=255) gAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtga < 2:431182‑M2/143‑116 (MQ=255) atCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGGAACAGAGGTTCGAATCCCCTAGGGGACGCCACCTACTCGGTGGTGAGTGAAAGTAGCCGCACTTAatc > 1:473989/1‑142 (MQ=11) tCACGCAACGCGTGATAAGCAATTGTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAatat < 2:242294/143‑1 (MQ=17) cACGCAAGCCGTCATAACCAACTTGCGTGCCCCCTTAGTCTAGAGGCCCGGGACACCGCCCTTTCACGGCGGCACCAGGGGGTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAAGAtc < 2:647467/143‑1 (MQ=11) cACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGACTCCCCTAGAGGGCGCCCCTTGCCGGTTTGTGAGTGAAAGTCGCCCACCTTCATAtc > 1:404497/1‑143 (MQ=11) ccgaaaCGCGGGATAAGCAAATCACGTGTCCCCTGCGTGTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTGCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTACTAtct < 1:443993/139‑1 (MQ=11) cgTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTc < 2:893694/143‑1 (MQ=34) cgTGATAAGCAATTTTCGGGCCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTc < 2:745444/143‑1 (MQ=18) gTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCa < 1:243151/143‑1 (MQ=35) aTAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCt > 1:811042/1‑143 (MQ=37) aGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCg > 2:311009/1‑143 (MQ=39) | GTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCG > NC_000913/4168223‑4168502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |