New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3639355	NA (NA)	2 (0.050) +CGAGACTGATTACA	3/236	NT	NA	intergenic (+214/+30)	pitA/uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
	?	NC_000913	= 4137897	NA (NA)					intergenic (‑240/+35)	yijF/gldA	conserved protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase

CGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGTGAATGGTTTCAC  >  NC_000913/4137759‑4138038                                                                                                                                           |                                                                                                                                              cGTGGGATTTGCAAATTACTGGCACGGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCaaa                                                                                                                                           <  1:138771/143‑1 (MQ=255) cGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCaaa                                                                                                                                           <  1:593440/143‑1 (MQ=255)  gTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAAc                                                                                                                                          <  2:308381/143‑1 (MQ=255)         tttCAGATTACTGGCACAGAGTGCCTGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATCGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGGTCAAACTCCCGGa                                                                                                                                   >  2:622198/1‑143 (MQ=255)         tttCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGCACGCCTTATCCGGCCTCCAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGCTAAGCGTAGCGCATCAGGCCATTTTGCGCTCCAACCCCCGGa                                                                                                                                   >  2:869989/1‑143 (MQ=18)         tttCAGATTACTGGCACAGAGCGCCGGATGCCGAGTGTACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATACGCGTAGAGCATCAGGCAGCATTGCGTTCCACCTCCCGGa                                                                                                                                   >  2:623878/1‑143 (MQ=18)          ttCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc                                                                                                                                  <  1:263267/143‑1 (MQ=255)               aTTACTTGCACAGAGTGCTGGATGCGGAGTGAACTCCTTATCCAGCTTACAAAAGCACGCAAATTCAAGAGAATGGAGAGATGGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGcc                                                                                                                             <  1:297301/143‑1 (MQ=18)               aTTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACCAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCCACTTTGCGTTCACACTCCCggccgaacc                                                                                                                             >  2:499423/1‑136 (MQ=18)                    tGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAACTTCAATATATTGCAGAGATTGCATAGGCCTGATAAGCATAGCGCAAAAAGCAATTTGTCGTGGAAACTCCCGGACAAGCCGGGAg                                                                                                                        >  1:473891/1‑143 (MQ=18)                                   gATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt                                                                                                         >  1:719786/1‑143 (MQ=255)                                      gCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTcc                                                                                                      <  1:795205/143‑1 (MQ=255)                                        ggAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCa                                                                                                    >  1:701130/1‑143 (MQ=255)                                         gAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCACACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTACTCCCAc                                                                                                   >  2:361556/1‑143 (MQ=255)                                         gAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCAc                                                                                                   >  1:739586/1‑143 (MQ=255)                                         gAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGCTTGGAGTAGGTTATTCCCAc                                                                                                   >  2:797266/1‑143 (MQ=255)                                         gAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTCCAAACTCCCGGACAAGGCGGGCAACCGGAGTCGGTTATCCCCAc                                                                                                   >  2:5501/1‑143 (MQ=17)                                         gAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAAGATATTGCAGAGATTGCGTCGGCCTGATAAGCGTAGCGCATCAGGCAATTTGGCGTTCAGACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCaa                                                                                                   >  2:643422/1‑142 (MQ=255)                                          aGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGGGTTTGGAGTAGGTTATTCCAAct                                                                                                  >  2:85855/1‑143 (MQ=255)                                          aGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGAAAAAGCAGGGAGGTTGGCGAAGGTGATTCCCCct                                                                                                  >  2:103323/1‑143 (MQ=18)                                              aaCGCCTTATCCCGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGGTATTTCCACTCTTg                                                                                              >  1:679817/1‑143 (MQ=255)                                               aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATACGCGTAGCGCATCAGGCAATTTTGCGTTCGACCTCCCCGACCAGCCGGCTCTTCCGCGTCGCTTATTCCCACTCttac                                                                                             >  1:293359/1‑141 (MQ=17)                                               aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGc                                                                                             >  1:599606/1‑143 (MQ=255)                                                cGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCa                                                                                            <  2:739586/143‑1 (MQ=255)                                                         cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCTGACAAGCCGGGAGTTTGGAGTAGGTTATTCCTACTCTTGCAGGAAAAGCt                                                                                   >  1:224426/1‑143 (MQ=255)                                                         cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATAAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGcg                                                                                   >  2:311279/1‑142 (MQ=255)                                                           gcgtACAAAAGCACGCAATTTCAATATATTGCAGAGATTGCGTAGGCCTGACAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACGCTTGCAGGAAACGCTGa                                                                                 <  2:390330/140‑1 (MQ=255)                                                               aCAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCCATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGt                                                                             >  1:739258/1‑143 (MQ=255)                                                                cAAAAGCACGCAAATTCAATCTATTGCAGAGATTCCGTAGCCCTCACACGCCTAGCGCACCACGCCACTTTGCCCTCACACTCCCGGACCCGCCGGCACTTTGCAGCCGGTCACTCACACTCTTCCACGAAACCCCGAccaag                                                                            >  2:800272/1‑140 (MQ=9)                                                                cAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCGGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAGAAGCCGGGAGGCTGGAGTAGGCTATGCCCACTCTTGCCGGCAACCCTGCGCGTa                                                                            >  2:801507/1‑143 (MQ=21)                                                                 aaaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCACGAAACGCTGACCGtca                                                                           >  2:480690/1‑141 (MQ=255)                                                                       aCGCAAATTCAATGTATTGCAGAGAGTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGGTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCg                                                                     <  2:680128/143‑1 (MQ=255)                                                                           aaaTTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATTGCGTTCAAACTCCCGGACAAGCCGGGCGTTTGGAGTCGGTTATTCCCACTCTTGCAGGAAACCCTGACCGTAGTGGGCGGCTa                                                                 >  1:194314/1‑143 (MQ=37)                                                                            aaTTCAATATACTGCACAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTAc                                                                <  1:597932/143‑1 (MQ=255)                                                                                cAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTTGTCGGCTACcagc                                                            >  1:509131/1‑143 (MQ=255)                                                                                  atagatTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTtgtaatcagtctcgagcgggccagtaaactgacccgctcgagactg                                                                                                 <  1:565061‑M2/104‑47 (MQ=255)                                                                                  atagatTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTtgtaatcagtctcgagcgggccagtaaactgacccgctcgagactg                                                                                                 >  2:565061‑M2/1‑58 (MQ=255)                                                                                         gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAAGGCTGACCGTACTGGTCGGCTACCAGCAGAgcggcg                                                   >  1:888472/1‑143 (MQ=255)                                                                                          cAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTCCTGGTCGGCTACCAGCAGAGCGGCGt                                                  >  2:436311/1‑143 (MQ=255)                                                                                           agatctcgCGTATGCTTGATGTGCGTGGTGCTTCATGGAGTTGTGCGATCAATGTCCGGGTCAAGCCGTGATTTTTGAGTAGGTTATGCCCTCCCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTa                                                 <  2:562364/136‑1 (MQ=255)                                                                                              gaTTGCGTAGGCCTGATAAGCGGAGCGCATCAGGCAATGTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAAc                                              <  2:351771/143‑1 (MQ=255)                                                                                                    gTAGGGCTGATAAGCTTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATc                                        <  1:892565/143‑1 (MQ=255)                                                                                                    gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGACGTAAACGTTATc                                        >  2:750153/1‑143 (MQ=255)                                                                                                          cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGACACGCTGACCGTACGGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGt                                  >  1:130668/1‑143 (MQ=255)                                                                                                                    tAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCCCTCTTGCAGGAAACGCTGACCGCACTGGTCGGCTACCAGCAGAGCGGCGTAAAGCTGATATGGCGTCGGGCGGCCa                        >  2:629815/1‑143 (MQ=255)                                                                                                                    tAGCGCATCAGGCAATTTTGCGGTCGAACTCCCGGACAAGCCGGGAGTTTGGCGTAGGTTATCCCCACTCTTGCAGGAAACGCTGACCGTACGGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCa                        <  2:107966/143‑1 (MQ=255)                                                                                                                          aTCAGGCAATTTGGCGTTCAAACGCCCGGACAGGCCGGGAGGTTGAAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGGCGCGACGCCAgatcag                  <  1:78682/143‑6 (MQ=255)                                                                                                                           tCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTATGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTAGCGTCGCACCGCCAGGCAtgt                 >  1:523060/1‑143 (MQ=255)                                                                                                                             aGGCAATTTTGCGTGCACACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCAtgttg               <  1:23202/143‑1 (MQ=255)                                                                                                                                cggttttGCGGTGCAGCTCCCGGACAAGCCGGGAGTGTGGAGTGGGGGATTCCCGCTCGTGCAGGAAACGCTGACCGTACTGGTCGGCTAGCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGTGa            <  2:255097/140‑1 (MQ=255)                                                                                                                                  aTTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCAAACTCATGAAGGATACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGTGAAt          >  1:435344/1‑143 (MQ=255)                                                                                                                                    tgtGCGTGCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGTGAATgg        <  1:385759/141‑1 (MQ=255)                                                                                                                                          tttgtaatcagtctcgagcgggtcagtttactggcccgctcgagactgattacaaacgcaaaattgcgtgctgcgctacgcttatcaggcctacataatctctgcaatctattgaatttgcatggttttgtaggccggataag  <  2:472863‑M2/143‑142 (MQ=255)                                                                                                                                           |                                                                                                                                              CGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTGGTCGGCTACCAGCAGAGCGGCGTAAACCTGATCTGGCGTCGCGCCGCCAGGCATGTTGTGAATGGTTTCAC  >  NC_000913/4137759‑4138038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.