| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 566777 = | NA (NA) | 2387 (40.310) | 263/278 | 0.0 | 97.1% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 71 (1.190) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGA > NC_000913/566636‑566906 | gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg > 1:576119/1‑143 (MQ=255) agagctcAGAAATTAAGGCTAAGTTCGGACTGAAAGGAGGAAGTGTAGGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt < 1:72617/137‑1 (MQ=255) acaaacgaGAAAGTACAGCTAAGGTCTGACCGAACGGAGCAAGTGTCTGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCCTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt < 2:97391/136‑1 (MQ=255) gCAGAAAGTAAAGCTAAGGTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAc < 2:888622/143‑1 (MQ=255) aGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAccc < 1:481043/143‑1 (MQ=255) aaaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAg < 1:530061/143‑1 (MQ=255) ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa > 2:44801/1‑143 (MQ=255) ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa > 1:670562/1‑143 (MQ=255) aGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGaca < 1:852816/143‑1 (MQ=255) ttCGCACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGCCAATTACTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcg < 1:313071/143‑1 (MQ=255) tCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCAGTGGATAGGACGGTGCGGCGGTAACAGGCGCGACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc > 1:696372/1‑143 (MQ=39) aCTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGACCTTACCCAGCAATAGTGGACACGCGGCt > 2:166837/1‑143 (MQ=255) tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 2:626563/1‑143 (MQ=255) ataGGAGCAAGTGGATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 2:116359/141‑1 (MQ=255) aaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTg > 1:682050/1‑143 (MQ=255) aGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 2:682050/143‑1 (MQ=255) ggAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTggg > 1:294143/1‑141 (MQ=255) gAGCAAGTGTATGACGGGCAAAGCGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 1:747580/143‑1 (MQ=255) tATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑Ctca < 2:576119/143‑1 (MQ=255) ggtGACGGGCAAAGAGGCAATTACTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑Ctca < 2:931569/141‑1 (MQ=255) aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCAACATAATGATGCGCAACCGTAATCTGATATTGGACAGCAACAGCCGCACCGCAGCACATGGAGTAACCT‑‑Ctca‑gtca > 1:1102464/1‑143 (MQ=255) gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCT‑‑CTCA‑GTCagagc > 1:192001/1‑142 (MQ=255) gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAgg > 1:549976/1‑143 (MQ=255) cAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGt < 1:843993/143‑1 (MQ=255) gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTcac > 2:33202/1‑143 (MQ=255) ttCATTACCTGGGGACGCATAAGAGCTTCTGTCCACCGGACGTTGCCGCGGTAACAGTCGCAACCGTAATCTGATCTTCCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCC‑GTCAGAGGTGCCGCACCTGACaa > 1:263113/1‑143 (MQ=25) tACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCGATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGTTACATACGACAAAAACa > 1:558329/1‑143 (MQ=25) cTGGGGACGCCCAGGAGCTGCTGTGCACAGGACGTCGCCGCGAGAACAGGCGCAACCGTAACCTCATCTCACCCAGCAAGAGTGGACCCGCGGCTAAACAAGTAAACT‑‑CTCC‑GCCAGAGTTAACTCACATGACAAAAACAGTa < 2:940405/143‑1 (MQ=16) tcagtctgCATAAGGGCTCCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTAt < 2:378220/136‑1 (MQ=255) ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATc < 1:44801/143‑1 (MQ=255) gggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCa > 2:24489/1‑143 (MQ=255) gggACGCATAAGAGCTTCGGTGCACAGGATGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCa < 2:563776/143‑1 (MQ=255) ggcaCGAATAAGAGCTTCTGGGGACAGGGCGTTGGCGCGGTAACAGGCGCAACCGTAATCGGATCGTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCa < 2:42286/140‑1 (MQ=18) ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGAAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CGCA‑GTCAGAGGTGACTCACATGACAAACACAGTACCaa > 2:1032735/1‑143 (MQ=255) gtcGCATAAGGTCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTATTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGTCTCACATGACAAAAACAGTATCAAc < 2:271832/141‑1 (MQ=255) gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAAc < 1:1099107/143‑1 (MQ=255) gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCGCATGACAAAAGCAGTGTCAACCAg > 1:653754/1‑143 (MQ=255) gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg > 1:919160/1‑143 (MQ=255) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa > 1:1041341/1‑143 (MQ=255) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa > 1:876328/1‑143 (MQ=255) tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa > 1:878896/1‑143 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAACAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACGCACATGACACACACCGTATCCACCAGCaaaa > 2:750083/1‑143 (MQ=21) gagCTGCCGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGACCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaa < 2:1117349/143‑1 (MQ=255) cTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCGGTAAAAAGcc > 1:833531/1‑143 (MQ=255) tCTGTGCGCAGGTCTTTGCCGCGGTGACGGGCGCACTCGTTATCGGATCTTGCCCAGCAATAGTGGACGCGCGGCTAAGTGAGTTAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc < 2:196593/143‑1 (MQ=14) tCTGTGCACAGGACGTTGCCGTTGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGTCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGATAAAAACAGTATCAACCAGTAAACAAcccc < 2:296044/143‑1 (MQ=17) tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc < 2:876328/143‑1 (MQ=255) tatgaGGACGTTGCCGCCGAAACAGGCGCCACCGCAAGTTGATCTTACCCAGCAATAGTGCACACGCGGATAAGGCAGTAAAAC‑‑TTCA‑GTCAGAGGTCACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 2:195671/139‑1 (MQ=14) gCACAGGACGTTGCCGCGGTAACAGGCGCGACCGTGATCGGATCTTACGCGGCAATAGGGGACACGCGGCTAAGTGAGGAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 2:187599/143‑1 (MQ=17) cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACACGGCCAAGAGGGGAAACT‑‑TTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAACACCCCGTAAAc > 1:209624/1‑143 (MQ=17) cacaGGACGTCGCCCCGGTAACAGGCGCCACCGTAATCCGATCTTACCCAGCAATAGGGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc < 2:51171/143‑1 (MQ=17) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAATGAGTAAACT‑‑ATCA‑GTCAAAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa > 1:425072/1‑143 (MQ=255) ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGACACATTTTACTGATATCAGA‑AAGCCATACATG‑‑AATAACAGTATCAACCAGTAAAAACCCCCGTAAACAGCATTCGc > 2:791007/1‑143 (MQ=12) ccGCGGTAACAGGCGCAACCGTAATCTGCTCTTACCCAGCAATAGTGGACCCGCGGCTAAGTGCGCAAACT‑‑CTCC‑GTCAGCGCTGACTCACACGACAAAGACAGTCTCACCCCGTAAAACACACCGTACCCCGCCTTCGCCTg > 1:448082/1‑143 (MQ=14) cgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAt > 1:90864/1‑143 (MQ=255) tAACAGGCGCAACCGTAATCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTc < 1:33202/143‑1 (MQ=255) ggaggggaaCCGTGAACTGATCTAACCCAGCAATAGTGGACAAGCGGCTAAGTGAGTAAGCT‑‑CTAA‑GTCGGAGGCGGCTAACATGACAAAAACAGTATCAACCAGTACAAAACACCGTAAACACCATTAGCCTGAATCTCGCa > 2:459174/8‑143 (MQ=11) cAGGGGCAACCGTACTCTGATCGTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACACGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 1:72565/143‑1 (MQ=255) cAGGCGCAACCGTGATCTACTATCACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 2:661519/143‑1 (MQ=11) cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa > 1:442635/1‑143 (MQ=38) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCAAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGACTATCGCAg > 2:52781/1‑143 (MQ=255) cgcAACCGTAATCGGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGAGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGa < 2:870279/143‑1 (MQ=255) | GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACT‑‑CTCA‑GTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGA > NC_000913/566636‑566906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |