New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 998447	103 (1.080)	8 (0.090)	8/256	NT	7.6%	intergenic (+40/‑43)	elfA/elfD	putative laminin‑binding fimbrial subunit/putative fimbrial chaperone ElfD
	?	NC_000913	= 998451	99 (1.110)					intergenic (+44/‑39)	elfA/elfD	putative laminin‑binding fimbrial subunit/putative fimbrial chaperone ElfD

CATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/998290‑998447 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctccagAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATC  <  NC_000913/998451‑998303                                                                                                                                                                                                                                                                                                                     CATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTAC                                                                                                                                                               <  2:794102/150‑1 CATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTAC                                                                                                                                                               >  1:515826/1‑150 CATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTAC                                                                                                                                                               >  1:764461/1‑150  ATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACC                                                                                                                                                              <  1:193497/150‑1       GTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCC                                                                                                                                                         <  2:264197/150‑1       GTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCC                                                                                                                                                         >  1:893624/1‑150        TTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCA                                                                                                                                                        <  2:54738/150‑1         TGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAG                                                                                                                                                       <  1:544749/150‑1                      TCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAAAAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGG                                                                                                                                          <  1:1234647/150‑1                        AGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTA                                                                                                                                        <  2:1600293/150‑1                         GACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTAC                                                                                                                                       <  2:976242/150‑1                               GACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTACTAATTA                                                                                                                                 <  2:7658/150‑1                                      AAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTACTAATTAATAAAAC                                                                                                                          <  2:515826/150‑1                                                          ggtGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGATCTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAAT                                                                                                      <  2:127851/147‑1                                                                   GACATCACGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATAAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAA                                                                                             <  1:540072/150‑1                                                                               aGTGAATGCGCTAACAAATTTCCATATAAACAATTATTAATAGAACTCATTAATTGTTTTATTAATTACTACCCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTG                                                                                 <  1:1075487/149‑1                                                                                                                                                       CCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGAT         <  2:10605/150‑1                                                                                                                                                       CCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGAT         <  1:512833/150‑1                                                                                                                                                          TCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTC      <  1:1477797/150‑1                                                                                                                                                           CCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCC     >  2:1396995/1‑150                                                                                                                                                           CCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCC     >  2:518727/1‑150                                                                                                                                                             AGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCAT   <  2:1125787/150‑1                                                                                                                                                             AGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGAGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCAT   >  1:662879/1‑150                                                                                                                                                              GAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATC  <  2:1491228/150‑1                                                                                                                                                                                                                                                                                                                     CATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/998290‑998447 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctccagAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATC  <  NC_000913/998451‑998303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.