New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1200516 =90 (0.950)6 (0.060) 4/266 NT 6.8% coding (291/1128 nt) intE e14 prophage; putative integrase
?NC_000913 1200556 = 77 (0.830)coding (251/1128 nt) intE e14 prophage; putative integrase

Only 100 of 102 total aligned reads displayed.

CCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGC  >  NC_000913/1200367‑1200665
                                                                                                                                                     |                                                                                                                                                         
ccAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTg                                                                                                                                                           >  1:127929/1‑150 (MQ=255)
  aggaaaattccatgctttgggaacaaacgaagctgaagctatcgctattgccactgaggccaacactcgcctggctgaacaaagaacccggcagattctggctatcagtgacaggatcgcaaccagcaaaggaaaggctatcacaacGTc                                                                                                                                                         <  1:317504‑M1/3‑1 (MQ=255)
   gcggcgATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCa                                                                                                                                                        <  2:778971/150‑1 (MQ=255)
     ggcgATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATc                                                                                                                                                      <  1:294724/150‑1 (MQ=255)
         atatACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTgg                                                                                                                                                  >  1:708747/1‑150 (MQ=255)
           ataCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑At                                                                                                                                            <  2:708747/150‑1 (MQ=255)
            taCTCATCAAGCAATTGTGCTATATCTCTGACTTCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATc                                                                                                                                           <  2:1449635/150‑1 (MQ=255)
            taCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATc                                                                                                                                           >  2:893033/1‑150 (MQ=255)
            taCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATc                                                                                                                                           >  1:425874/1‑150 (MQ=255)
            taCTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATc                                                                                                                                           >  2:865891/1‑150 (MQ=255)
               tcatcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCt                                                                                                                                        >  1:234949/1‑150 (MQ=255)
                catcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCtt                                                                                                                                       >  2:109129/1‑150 (MQ=255)
                catcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCtt                                                                                                                                       <  1:1401095/150‑1 (MQ=255)
                 atcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTg                                                                                                                                      <  1:876928/150‑1 (MQ=255)
                  tcaAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGa                                                                                                                                     <  2:79047/150‑1 (MQ=255)
                   caAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGAt                                                                                                                                    <  1:665084/150‑1 (MQ=255)
                   caAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGAt                                                                                                                                    <  2:743874/150‑1 (MQ=255)
                      gCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGc                                                                                                                                 <  2:918251/150‑1 (MQ=255)
                          ttGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATc                                                                                                                             <  2:1016875/150‑1 (MQ=255)
                          ttGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATc                                                                                                                             <  1:1154243/150‑1 (MQ=255)
                          ttGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATc                                                                                                                             <  2:252581/150‑1 (MQ=255)
                           tgtgCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCt                                                                                                                            <  1:1560444/150‑1 (MQ=255)
                           tgtgCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCt                                                                                                                            <  2:1291564/150‑1 (MQ=255)
                            gtgCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTa                                                                                                                           >  2:840558/1‑150 (MQ=255)
                               cTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAAcc                                                                                                                        >  1:968951/1‑150 (MQ=255)
                                    tctcTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGtt                                                                                                                   <  1:840558/150‑1 (MQ=255)
                                     ctctGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTg                                                                                                                  <  2:1500625/150‑1 (MQ=255)
                                     ctctGACATCAACGGCTGAGATCAACTTAATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTg                                                                                                                  >  1:56120/1‑150 (MQ=255)
                                     aagctatcgctattgccactgaggccaacactcgcctggctgaacaaagaacccggcagattctggctatcagtgacaggatcgcaaccagcaaaggaaaggctatcacaacGTCAACCTGGTTGGATCGCTTGATAGCGATCTAACCAg                                                                                                                      >  1:971433‑M1/113‑150 (MQ=255)
                                      tctGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGa                                                                                                                 <  2:20716/150‑1 (MQ=255)
                                       ctGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGAc                                                                                                                >  2:730975/1‑150 (MQ=255)
                                       ctGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGAc                                                                                                                >  2:233243/1‑150 (MQ=255)
                                        tGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACg                                                                                                               <  2:1208386/150‑1 (MQ=255)
                                         tatcgctattgccactgaggccaacactcgcctggctgaacaaagaacccggcagattctggctatcagtgacaggatcgcaaccagcaaaggaaaggctatcacaacGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGt                                                                                                              >  1:290561‑M1/109‑150 (MQ=255)
                                          atcgctattgccactgaggccaacactcgcctggctgaacaaagaacccggcagattctggctatcagtgacaggatcgcaaccagcaaaggaaaggctatcacaacGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGtt                                                                                                             >  2:455176‑M1/108‑150 (MQ=255)
                                           tcgctattgccactgaggccaacactcgcctggctgaacaaagaacccggcagattctggctatcagtgacaggatcgcaaccagcaaaggaaaggctatcacaacGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTtg                                                                                                            >  2:655254‑M1/107‑150 (MQ=255)
                                           tcgctattgccacggaggccaacactcgcctggctgaacaaagaacccggcagagtctggctatcagtgacaggatcgcaaccagcaaaggaaaggctatcacaacGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTtg                                                                                                            >  2:854670‑M1/107‑150 (MQ=255)
                                           cATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTtg                                                                                                            <  1:14676/150‑1 (MQ=255)
                                           cATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTtg                                                                                                            <  2:234949/150‑1 (MQ=255)
                                            aTCAACGGCTGAGATCAACTTCATACCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTtgt                                                                                                           <  2:1576476/150‑1 (MQ=255)
                                              cAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGa                                                                                                         >  2:174459/1‑150 (MQ=255)
                                               aaCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGAt                                                                                                        <  1:88257/150‑1 (MQ=255)
                                               aaCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGAt                                                                                                        <  1:980206/150‑1 (MQ=255)
                                                aCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATa                                                                                                       >  1:310695/1‑150 (MQ=255)
                                                aCGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATa                                                                                                       <  1:1555493/150‑1 (MQ=255)
                                                   gCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGcc                                                                                                    <  2:1655263/150‑1 (MQ=255)
                                                   gCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGcc                                                                                                    >  2:1661357/1‑150 (MQ=255)
                                                      gagaTCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGccttt                                                                                                 >  2:830941/1‑150 (MQ=255)
                                                       agaTCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGcctttc                                                                                                >  1:1374228/1‑150 (MQ=255)
                                                          tCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGcctttcctt                                                                                             >  1:911275/1‑150 (MQ=255)
                                                          tCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGcctttcctt                                                                                             >  1:249061/1‑150 (MQ=255)
                                                           cAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGcctttccttt                                                                                            <  2:1374228/150‑1 (MQ=255)
                                                               ttCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTg                                                                                        <  2:425874/150‑1 (MQ=255)
                                                                tCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTgt                                                                                       >  2:1293925/1‑149 (MQ=255)
                                                                   ttCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTg                                                                                    <  2:159155/150‑1 (MQ=255)
                                                                     ccTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCg                                                                                  >  1:1384459/1‑150 (MQ=255)
                                                                       tGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGAt                                                                                <  2:1491062/150‑1 (MQ=255)
                                                                        ctggctgaacaaagaacccggcagattctggctatcagtgacaggatcgcaaccagcaaaggaaaggctatcacaacGTCAACCTGGTTAGATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGc                                                                                   >  1:988765‑M1/78‑150 (MQ=255)
                                                                          tCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCt                                                                             <  1:1661357/150‑1 (MQ=255)
                                                                             ttCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTc                                                                          <  2:805172/150‑1 (MQ=255)
                                                                                   gAGCAAGGATACTGGTTTAGCTTTATGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGGTGGTTGCGATCATGTCACTGAt                                                                    >  2:1099997/1‑150 (MQ=255)
                                                                                    aGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTACCCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATa                                                                   >  2:180633/1‑150 (MQ=255)
                                                                                    aGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATa                                                                   <  2:914670/150‑1 (MQ=255)
                                                                                     gCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAg                                                                  <  1:893033/150‑1 (MQ=255)
                                                                                     gCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAg                                                                  >  1:1198850/1‑150 (MQ=255)
                                                                                      cAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGc                                                                 >  1:691275/1‑150 (MQ=255)
                                                                                      cAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGc                                                                 >  2:1162713/1‑150 (MQ=255)
                                                                                             aCTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATc                                                          >  2:919635/1‑150 (MQ=255)
                                                                                                ggTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGc                                                       >  2:344567/1‑150 (MQ=255)
                                                                                                ggTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGc                                                       >  2:595922/1‑150 (MQ=255)
                                                                                                 gTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGcc                                                      <  1:1620385/150‑1 (MQ=255)
                                                                                                 gTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCAATTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGACTTTCATTTGCTGGTTGAGATACTGTCACTGATAGCCAGAATCTGcc                                                      >  2:898353/1‑150 (MQ=255)
                                                                                                     aGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGt                                                  >  1:110683/1‑150 (MQ=255)
                                                                                                          tttGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCttt                                             <  1:233243/150‑1 (MQ=255)
                                                                                                          tttGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCttt                                             >  2:1191078/1‑150 (MQ=255)
                                                                                                           ttGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTg                                            <  1:919635/150‑1 (MQ=255)
                                                                                                            tGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGt                                           <  1:344567/150‑1 (MQ=255)
                                                                                                             ctttATACGTGTTCAGTATTATAACACAACTTTTAAACATTTCATACTGG‑‑‑‑ATCAATTCATAGCTATCAAACAAAGTTAACATTATAATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGtt                                          >  2:1630945/2‑150 (MQ=255)
                                                                                                               ttATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCa                                        <  1:109129/150‑1 (MQ=255)
                                                                                                                  taGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGcc                                     >  2:565764/1‑150 (MQ=255)
                                                                                                                   aGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCa                                    <  2:1198850/150‑1 (MQ=255)
                                                                                                                      tgtTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTTG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTCTGTTCAGCCAGGc                                 <  1:865891/150‑1 (MQ=255)
                                                                                                                                tataTCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGc                       >  1:1572829/1‑150 (MQ=255)
                                                                                                                                tataTCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGc                       >  1:298311/1‑150 (MQ=255)
                                                                                                                                   atCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATa                                                                   <  2:225314/103‑1 (MQ=255)
                                                                                                                                   atCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATa                                                                   >  1:225314/1‑103 (MQ=255)
                                                                                                                                   atCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTc                    >  1:633142/1‑150 (MQ=255)
                                                                                                                                   atCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTc                    >  1:1642091/1‑150 (MQ=255)
                                                                                                                                     caccacTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAg                  >  2:1404603/1‑150 (MQ=255)
                                                                                                                                     caccacTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATATAACCAGGTTGAAGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAg                  >  2:174296/1‑150 (MQ=255)
                                                                                                                                      accacTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGt                 >  2:1223552/1‑150 (MQ=255)
                                                                                                                                      accacTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGt                 >  1:1202772/1‑150 (MQ=255)
                                                                                                                                       ccacTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTg                >  1:449120/1‑150 (MQ=255)
                                                                                                                                        cacTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTgg               <  2:310695/150‑1 (MQ=255)
                                                                                                                                         acTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGc              <  2:127929/150‑1 (MQ=255)
                                                                                                                                         acTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGc              <  1:174459/150‑1 (MQ=255)
                                                                                                                                         acTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGc              <  2:691275/150‑1 (MQ=255)
                                                                                                                                                aGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCg       >  1:62024/1‑150 (MQ=255)
                                                                                                                                                  ccTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGAt     >  2:1314332/1‑150 (MQ=255)
                                                                                                                                                     GTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGc  >  2:249061‑M1/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                         
CCAGCGGCGATATACTCATCAAGCAATTGTGCTATATCTCTGACATCAACGGCTGAGATCAACTTCATTCCTGCTCGTTCTCTGAGCAAGGATACTGGTTTAGCTTTTTGTTTATAGGTGTTGAGTCTTATATCACCACTTTTAAGCCTGTCATCCTGG‑‑‑‑ATCGCTTGATAGCGATCTAACCAGGTTGACGTTGTGATAGCCTTTCCTTTGCTGGTTGCGATCCTGTCACTGATAGCCAGAATCTGCCGGGTTCTTTGTTCAGCCAGGCGAGTGTTGGCCTCAGTGGCAATAGCGATAGC  >  NC_000913/1200367‑1200665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.