| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4498221 | 170 (1.500) | 10 (0.090) | 10/256 | NT | 5.8% | noncoding (41/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4498223 | 165 (1.560) | noncoding (43/1331 nt) | IS2 | repeat region | |||||
TTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4498065‑4498221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcacttaTTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATATAAA < NC_000913/4498223‑4498075 TTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATA < 1:1368267/150‑1 ATTCATTATTTATATACATTGAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC < 2:408844/150‑1 ATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC < 2:997550/150‑1 ATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC < 2:236953/150‑1 TCATTATTTATTTACATTCAATTAAAAAGTAACCTGATAAATAATCCTGTACTGAGAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGAGTGGCCCCCTGAATCTCCAGACAACCAATATCAC < 2:1393853/150‑1 TCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC < 2:418330/150‑1 CATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGGTGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT > 2:1987631/1‑150 CATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT > 2:960638/1‑150 CATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT > 1:1165817/1‑150 CATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT > 1:1953946/1‑150 CATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACT > 2:1551184/1‑150 ATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT < 1:1672117/150‑1 ATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT > 1:1878456/1‑150 TTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA < 2:1553128/150‑1 TTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTTACTTAAGGAGTGCTGCATGTATTTGATGTTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATT < 2:1454745/150‑1 TCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTG < 2:670911/150‑1 AATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGT < 1:1610279/150‑1 ATAAAAAACTAACCTCATAAAAAATCCTGTACTCACAGGGTGATTCGGGATAACTGACGTAAGGAGTGCTGCAGTTATTTGATGGTCCCTTGTAGTCTGGCGCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGTT < 1:834075/150‑1 AAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGTTGTC < 1:98589/150‑1 AAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGTTG < 1:308906/133‑1 AAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGTTG > 2:308906/1‑133 ATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAAT < 2:644276/150‑1 CGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGC < 1:279760/112‑1 CGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGC > 2:279760/1‑112 TATCACTTATTTAGGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATG < 2:1050527/150‑1 TATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATG < 1:625763/150‑1 TATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATG < 1:1401068/150‑1 TATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATG < 1:1487823/150‑1 ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGT > 1:1275862/1‑150 ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGT > 2:490290/1‑150 ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCACCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGT > 2:1909255/1‑150 TCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTA > 1:122861/1‑150 TCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTA < 2:35688/150‑1 TCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTA < 1:1562960/150‑1 TCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTA < 1:187803/150‑1 CACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTT < 1:593053/120‑1 CACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTT > 2:593053/1‑120 ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATA < 1:1897903/150‑1 ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATA > 2:1371106/1‑150 ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATA < 1:1379230/150‑1 ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATA < 1:23146/150‑1 ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAAT > 1:502819/1‑145 ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAAT < 2:502819/145‑1 CTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCTAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATAT > 2:1229865/1‑150 CTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATAT > 1:137178/1‑150 TTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATATA < 1:615320/150‑1 TTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATATA < 1:1396402/150‑1 TATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATATAA > 2:187027/1‑150 ATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATATAAA > 1:1300328/1‑150 ATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCACTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATATAAA > 2:790687/1‑150 TTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4498065‑4498221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcacttaTTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTACAAGGGACCATCAAATCCCTGCAGCACTCCTTACGTCAGTTATCCCGCATCACCCTGTGAGTACAGGATTTTTTATGAGGTTACTTTTTTATTGAATGTATATAAA < NC_000913/4498223‑4498075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |