New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2304533NA (NA)4 (0.040) 3/268 NT NA noncoding (32/34 nt) other REP161c
?NC_000913 = 2304789 NA (NA)noncoding (2/34 nt) other REP161g

GTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTG  >  NC_000913/2304643‑2304938
                                                                                                                                                  |                                                                                                                                                     
gTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTTATGCGACTCTGGCGCGTCTTATCAGTCCTACACCGCTGTTAAGTGCTCCACCCCGTAGGTTTGATAAGGCGGTTACGCCGCATCCGACATc                                                                                                                                                    <  2:1193179/150‑1 (MQ=11)
             ggCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGcc                                                                                                                                       >  1:1412806/1‑150 (MQ=37)
             ggCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGcc                                                                                                                                       <  1:1566813/150‑1 (MQ=37)
               cGGTTACGCCGCATCCGACATCTAACGCCCCAGCCGGTTGCCTCATGCGACGCTTGCGCGGCTTATCAGGCCGAGACCGCTGTGAAGTGCTCCACCCCGTAGGTGGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCgg                                                                                                                                     <  1:483830/150‑1 (MQ=11)
                    aCGCCGCATCCGTCAGCTAACCCCCCAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGACAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGcc                                                                                                                                <  1:1324676/150‑1 (MQ=11)
                     cgccgcATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACAGCCAACGTCCGAGCCGGTTGCCt                                                                                                                               >  1:798546/1‑150 (MQ=37)
                             ccGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGAc                                                                                                                       <  1:32149/150‑1 (MQ=37)
                              cGACATCAACCGCCCCAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTGGGATAAGGCGGTCACGCGGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACg                                                                                                                      <  1:1238152/150‑1 (MQ=11)
                               gACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                     <  1:1260393/150‑1 (MQ=37)
                               gACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                     <  1:1471933/150‑1 (MQ=37)
                                    cTATCGCCCCAGGCGGTTGCCTGAGGCGACGGGGTCGCGTCTTTTCTGGACTAGACCGCTGTGACGTGCTCCACCCCGTAGGTTGTATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGgcg                                                                                                                <  1:1389325/150‑1 (MQ=11)
                                     tAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGgcgc                                                                                                               >  2:1545011/1‑150 (MQ=37)
                                      aaCGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGcgcg                                                                                                              <  2:1173813/150‑1 (MQ=37)
                                            ccaGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAAACCTCTGTGAAGTGCTCCACCCCTTATGTTTTTTAATGCGTTTACGTAGAATACGAGATTCATCTTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                        <  2:1154643/148‑1 (MQ=11)
                                                         tGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCg                                                                                           <  2:1412806/150‑1 (MQ=39)
                                                                           tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGcc                                                                                                                                <  2:1926720/95‑1 (MQ=40)
                                                                           tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGcc                                                                                                                                >  1:1926720/1‑95 (MQ=40)
                                                                                 cAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCCTCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAgg                                                                   >  1:1535440/1‑150 (MQ=255)
                                                                                 cAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatc                                                                                            <  2:1899897‑M2/125‑60 (MQ=255)
                                                                                 cAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatc                                                                                            >  1:1899897‑M2/1‑66 (MQ=255)
                                                                                         cacCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTCTGAAGTGCTACACCACGTAGGTCGGATaa                                                           >  2:1809092/1‑150 (MQ=255)
                                                                                                    aGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgc                                                >  1:1418799/1‑150 (MQ=255)
                                                                                                    aGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgc                                                <  1:1545011/150‑1 (MQ=255)
                                                                                                           tatcccTTATGTTGGATCATGCGTTTTCGCCGCATCCGACATCCAACGTCCTAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATcc                                         <  2:798546/147‑1 (MQ=11)
                                                                                                              cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAc                                      >  1:236016/1‑150 (MQ=255)
                                                                                                                    ggTTGGATAAGGCGGTTACGCCGCATCCGACctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctggggcgttagatgtcggatgcggcgtaaccgccttgtcggacctacgg                                <  2:357257‑M2/150‑120 (MQ=255)
                                                                                                                     gTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAAc                               >  2:1629263/1‑150 (MQ=40)
                                                                                                                         gATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCCCCCCGTAGGTCGGATAAGGCGGTTACGCCGCATGGGACATCTAACGccc                           >  1:785189/1‑150 (MQ=255)
                                                                                                                         gATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGccc                           >  2:222992/1‑150 (MQ=37)
                                                                                                                         gATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGccc                           >  2:56837/1‑150 (MQ=37)
                                                                                                                         gATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCATACCCAGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGccc                           >  2:213027/1‑150 (MQ=255)
                                                                                                                           tAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACCCCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACTCCCaa                         >  1:1382710/1‑150 (MQ=25)
                                                                                                                                cGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCgg                    <  1:1629263/150‑1 (MQ=34)
                                                                                                                                   ccccgccgccccCGACctacggggtgcagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgttggatgtcggatgcggcgtgaccgccttgtctgacctacggggtgccgcacttcac                 >  1:357257‑M2/4‑16 (MQ=255)
                                                                                                                                     aCGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGcc               <  2:236016/150‑1 (MQ=32)
                                                                                                                                             tCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGa       >  2:1520804/1‑150 (MQ=32)
                                                                                                                                              ccGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATAAGCCAAACACCCATCAGAATTACAACACCCCCTAGGTCGTATAAGTAGCTAACGCAGAATCCCACATCTAACGCACCAGCAGGTTGCCTGAAGCCAc      >  2:1636627/1‑150 (MQ=2)
                                                                                                                                                  cATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTg  >  2:1513224/1‑150 (MQ=32)
                                                                                                                                                  |                                                                                                                                                     
GTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTG  >  NC_000913/2304643‑2304938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.