| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 568276 | 91 (0.410) | 199 (0.900) | 107/184 | 0.6 | 68.6% | intergenic (+29/‑39) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
Only 100 of 504 total aligned reads displayed.
AGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAA > NC_000913/568177‑568375 | aGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgta < 1:1010975/100‑1 (MQ=255)aGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgta < 1:4072839/100‑1 (MQ=255) gtCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggt > 1:1127344‑M1/1‑97 (MQ=255) gCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaat < 1:1693404‑M1/100‑7 (MQ=255) agggCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTgta < 2:3690776/86‑1 (MQ=255) agTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATtctc > 1:47076/1‑100 (MQ=255) gTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAg < 2:2577098‑M1/89‑2 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTgtag < 2:1470705‑M2/10‑1 (MQ=255) tGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAgg < 2:1673051‑M1/89‑3 (MQ=255) cgcgATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaact > 1:2630778‑M1/1‑84 (MQ=255) cgATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaactta > 1:8767‑M1/1‑82 (MQ=255) gATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttat > 1:3391723‑M1/1‑81 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATtc < 2:5544995‑M2/18‑1 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTg < 1:3102960‑M2/29‑1 (MQ=255) tGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgact < 2:774233‑M1/89‑11 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATtct > 2:3058106‑M2/71‑89 (MQ=255) aaacagaagccactggagcacctcaaaaactccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATtctct < 2:4704870‑M2/21‑1 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatgcactaaatcagtaagttggcagcatcaccCAAACTGTAGTACaa < 1:4623423‑M2/15‑1 (MQ=255) aaaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgat > 1:4848423‑M1/1‑77 (MQ=255) aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACa < 1:396023‑M2/33‑1 (MQ=255) aaCGGGTATTGATGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACa < 1:5247167/100‑1 (MQ=255) aaCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactcca < 2:704058‑M1/89‑14 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAg < 2:1160323‑M2/25‑1 (MQ=255) tATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAg < 1:5360583/100‑1 (MQ=255) agccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAg > 1:5521095‑M2/62‑100 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGttt < 2:1955856‑M2/28‑1 (MQ=255) aTTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttatt < 2:4060172‑M1/89‑21 (MQ=255) aTTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttatt < 2:5048566‑M1/89‑21 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAat < 1:2036093‑M2/42‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAAc > 2:1284563‑M2/58‑89 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAatat < 1:3333679‑M2/44‑1 (MQ=255) ggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAgg > 2:3541313‑M2/55‑89 (MQ=255) gTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttca > 1:3547241‑M1/1‑62 (MQ=255) tatataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcag < 1:1929643‑M1/100‑40 (MQ=255) taAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataa > 1:5074684‑M1/1‑57 (MQ=255) taAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgtttta > 2:1374372‑M1/1‑57 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAat > 2:3908328‑M2/48‑89 (MQ=255) aaaaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAAc > 1:3255517/1‑100 (MQ=255) aaaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatg < 1:1621855‑M1/100‑46 (MQ=255) aaaGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatg < 2:1778979‑M1/89‑35 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAatat < 2:155451‑M2/44‑1 (MQ=255) gAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactcccacttattgatagtgttttatgttc > 2:4321991‑M1/1‑52 (MQ=255) gAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgccc < 1:4582412‑M1/100‑49 (MQ=255) gAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGc < 2:103867/89‑1 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTtata < 1:4266450‑M2/60‑1 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATg > 2:5244025‑M2/40‑89 (MQ=255) aTCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg < 1:2116902‑M1/100‑53 (MQ=255) aTCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagat > 2:270335‑M1/1‑48 (MQ=255) aaTGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataat > 2:3133651‑M1/1‑45 (MQ=255) aaTGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAAc > 2:1502407/1‑89 (MQ=255) aTGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatg < 2:3382981‑M1/89‑46 (MQ=255) tGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt > 1:5647805‑M1/1‑43 (MQ=255) ggAACANAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAANAANATGCTATGAACCCtt > 2:2298416/1‑89 (MQ=255) ggAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt > 1:1516023‑M1/1‑41 (MQ=255) ggAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgccc > 2:5374351‑M1/1‑41 (MQ=255) tacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtg < 1:620132‑M2/69‑1 (MQ=255) gAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgagtccaacgtaatgatagtggtttatggtcagataatgcccg > 2:2243314‑M1/1‑40 (MQ=255) aaCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca < 1:3828800‑M1/100‑62 (MQ=255) aaCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca < 1:3166895‑M1/100‑62 (MQ=255) aaCACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtgg > 1:4441953/1‑100 (MQ=255) cacaATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTatat < 2:459388/89‑1 (MQ=255) actaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggtg < 1:2777037‑M2/72‑1 (MQ=255) acaATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc < 1:1323129‑M1/100‑65 (MQ=255) taaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTggtggt > 1:3731197‑M2/27‑100 (MQ=255) caATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac > 2:3653102‑M1/1‑35 (MQ=255) caATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:3490418‑M1/1‑35 (MQ=255) aaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGgtggtg < 1:1806468‑M2/75‑1 (MQ=255) aaaCAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc > 1:286405‑M1/1‑27 (MQ=255) aaaCAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc > 1:2683930‑M1/1‑27 (MQ=255) agttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggtgg > 2:5506064‑M2/17‑89 (MQ=255) aCAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc < 2:4914928‑M1/89‑65 (MQ=255) aCAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggtgg < 2:1859975/89‑1 (MQ=255) cAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat > 1:1396153‑M1/1‑24 (MQ=255) ttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCa < 1:4766550‑M2/86‑1 (MQ=255) tggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGc > 2:4397376‑M2/14‑89 (MQ=255) ggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCaga > 1:1447319‑M2/13‑100 (MQ=255) tgagttgagtTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg < 1:3579509‑M1/100‑81 (MQ=255) tgagttgagtTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg < 1:2502948‑M1/100‑81 (MQ=255) gagttgagttCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc < 2:5142265‑M1/89‑71 (MQ=255) agttgagttCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca > 2:204197‑M1/1‑18 (MQ=255) agttgagttCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATa > 2:2801849/1‑89 (MQ=255) agttgagttCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGt < 1:947283/100‑1 (MQ=255) gttgagttCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgaga > 1:2316684‑M1/1‑17 (MQ=255) gcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATAc < 2:4979020‑M2/81‑1 (MQ=255) catcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACt > 2:2857436‑M2/8‑89 (MQ=255) caccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGc < 2:334957‑M2/85‑1 (MQ=255) caccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGc > 2:3736853‑M2/5‑89 (MQ=255) gttCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac > 1:222984‑M1/1‑12 (MQ=255) ccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCag < 2:2161215‑M2/87‑1 (MQ=255) ccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGt > 1:4331431‑M2/3‑100 (MQ=255) tCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt > 2:2956781‑M1/1‑10 (MQ=255) tCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTa < 1:4972518/100‑1 (MQ=255) cAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg < 2:2910104‑M1/89‑81 (MQ=255) cAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:5613886‑M1/1‑9 (MQ=255) aaaCTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAgg > 2:4003315/1‑89 (MQ=255) aaaCTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAgg < 2:3817689/89‑1 (MQ=255) gtagtaCAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCAtt > 2:4190647/1‑89 (MQ=255) gTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc < 1:2399950‑M1/100‑98 (MQ=255) tagtaCAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTg < 2:2394761/89‑1 (MQ=255) aggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccg < 1:390041‑M1/100‑100 (MQ=255) | AGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAA > NC_000913/568177‑568375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |