BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 568276	91 (0.410)	199 (0.900)	107/184	0.6	68.6%	intergenic (+29/‑39)	renD/emrE	DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE
*	?	NC_000913	= 1050545	NA (NA)	199 (0.900)	107/184	0.6	68.6%	noncoding (768/768 nt)	IS1	repeat region

Only 100 of 232 total aligned reads displayed.

AGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGT  >  NC_000913/1050451‑1050643

  tCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAta                                                                                             >  1:2164430/1‑100 (MQ=33)

       gTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgtac                                                                                        >  1:2334634/1‑100 (MQ=39)

        tCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgtacg                                                                                       <  1:3714340/100‑1 (MQ=40)

           ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt                                                                                    >  1:1411936/1‑100 (MQ=255)

            tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTg                                                                                   >  1:5366879/1‑100 (MQ=255)

             ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTga                                                                                  <  1:4860118/100‑1 (MQ=255)

              tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtac                                                                                            >  2:5646834/1‑89 (MQ=35)

              tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgag                                                                                 <  1:4256695/100‑1 (MQ=255)

              tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgag                                                                                 >  1:5443526/1‑100 (MQ=255)

              tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgag                                                                                 >  1:1991905/1‑100 (MQ=255)

              tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGCGCATTATCTGAACATAAAACACTATCAATAAGCTGGAGTCATTACCGACAAtac                                                                                            >  2:1758392/1‑89 (MQ=255)

               cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg                                                                                           >  2:4411446/1‑89 (MQ=37)

               cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg                                                                                           >  2:3393725/1‑89 (MQ=37)

                aaaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgt                                                                                          >  2:4254279/1‑89 (MQ=38)

                 aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATc                                                                              >  1:505710/1‑100 (MQ=255)

                  aaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCa                                                                             <  1:840974/100‑1 (MQ=255)

                   aTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCan                                                                            <  1:3949569/100‑2 (MQ=255)

                     cGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGa                                                                          >  1:2715194/1‑100 (MQ=255)

                          gAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga                                                                                <  2:3739990/89‑1 (MQ=255)

                          gAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTc                                                                     <  1:5602671/100‑1 (MQ=255)

                          gAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTc                                                                     <  1:279386/100‑1 (MQ=255)

                          gAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTc                                                                     >  1:4062343/1‑100 (MQ=255)

                           aGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCt                                                                    <  1:5271459/100‑1 (MQ=255)

                           aGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCt                                                                    >  1:3304952/1‑100 (MQ=255)

                            gCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATc                                                                              >  2:3010422/1‑89 (MQ=255)

                             cTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTAc                                                                  <  1:3184734/100‑1 (MQ=255)

                              tGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCACTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAg                                                                            >  2:1464797/1‑89 (MQ=255)

                              tGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAg                                                                            <  2:311772/89‑1 (MQ=255)

                              tGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAg                                                                            <  2:2572945/89‑1 (MQ=255)

                               gCATGACAAAGTCATCGGGCATTATCTGAACGTAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg                                                                           <  2:3643781/89‑1 (MQ=255)

                               gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg                                                                           <  2:3255204/89‑1 (MQ=255)

                               gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACtt                                                                >  1:3636112/1‑100 (MQ=255)

                                  tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt                                                                        >  2:5159302/1‑89 (MQ=255)

                                  tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa                                                             >  1:598890/1‑100 (MQ=255)

                                   gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                                                            <  1:5694587/100‑1 (MQ=255)

                                   gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                                                            >  1:45579/1‑100 (MQ=255)

                                   gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                                                            <  1:4370900/100‑1 (MQ=255)

                                   gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                                                            >  1:3857442/1‑100 (MQ=255)

                                   gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                                                            <  1:3113130/100‑1 (MQ=255)

                                     cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGta                                                          >  1:264302/1‑100 (MQ=255)

                                      aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCt                                                                    <  2:5373646/89‑1 (MQ=255)

                                       aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtata                                                        <  1:3510013/100‑1 (MQ=255)

                                        aGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTAc                                                                  >  2:1203761/1‑89 (MQ=255)

                                         gTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACt                                                                 >  2:4706855/1‑89 (MQ=255)

                                         gTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACt                                                                 <  2:4631527/89‑1 (MQ=255)

                                            aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTg                                                              >  2:2384739/1‑89 (MQ=255)

                                            aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATc                                                   >  1:5118485/1‑100 (MQ=255)

                                            aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATc                                                   >  1:1622912/1‑100 (MQ=255)

                                              cGGGCATTATCTGAACATAAAACACTATCTATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                                                            <  2:5294740/89‑1 (MQ=255)

                                              cGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                                                            <  2:5425266/89‑1 (MQ=255)

                                               gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt                                                           >  2:5189188/1‑89 (MQ=255)

                                                ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGta                                                          <  2:4213167/89‑1 (MQ=255)

                                                  cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgtg                                             <  1:503708/100‑1 (MQ=255)

                                                   aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATaa                                                       >  2:3983550/1‑89 (MQ=255)

                                                    ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAc                                                      <  2:3536181/89‑1 (MQ=255)

                                                     tATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACa                                                     <  2:3887629/89‑1 (MQ=255)

                                                        cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATcc                                                  <  2:617142/89‑1 (MQ=255)

                                                        cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATcc                                                  >  2:2650401/1‑89 (MQ=255)

                                                        cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtct                                       >  1:3640016/1‑100 (MQ=255)

                                                         tGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCt                                                 >  2:4155744/1‑89 (MQ=255)

                                                         tGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtctc                                      >  1:58103/1‑100 (MQ=255)

                                                          gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc                                     >  1:5624667/1‑100 (MQ=255)

                                                           aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtg                                               <  2:3313612/89‑1 (MQ=255)

                                                           aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTccc                                    <  1:1293313/100‑1 (MQ=255)

                                                            aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgt                                              >  2:4129932/1‑89 (MQ=255)

                                                             cATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCtt                                  >  1:4521482/1‑100 (MQ=255)

                                                             cATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCtt                                  >  1:522784/1‑100 (MQ=255)

                                                              aTAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCttt                                 >  1:891747/1‑100 (MQ=255)

                                                                 aaaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCt                              >  1:387959/1‑100 (MQ=255)

                                                                  aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtc                                        <  2:232996/89‑1 (MQ=255)

                                                                  aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtc                                        <  2:3586641/89‑1 (MQ=255)

                                                                  aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtc                                        >  2:1980042/1‑89 (MQ=255)

                                                                   acacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCa                            <  1:2488336/100‑1 (MQ=255)

                                                                   acacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCa                            <  1:1923504/100‑1 (MQ=255)

                                                                     acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATa                          <  1:4732346/100‑1 (MQ=255)

                                                                     acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCGTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc                                     <  2:4567751/89‑1 (MQ=255)

                                                                       tATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCt                                   >  2:1728546/1‑89 (MQ=255)

                                                                        aTCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCg                       >  1:3144964/1‑100 (MQ=255)

                                                                          cAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTc                                >  2:4925005/1‑89 (MQ=255)

                                                                          cAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCt                     <  1:2187892/100‑1 (MQ=255)

                                                                           aaTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTcc                               <  2:4849537/89‑1 (MQ=255)

                                                                            atcaGTTGGATTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCt                              >  2:3699465/4‑89 (MQ=255)

                                                                            aTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCt                              <  2:815065/89‑1 (MQ=255)

                                                                             tAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTc                             <  2:3492801/89‑1 (MQ=255)

                                                                             tAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGc                  <  1:2055380/100‑1 (MQ=255)

                                                                             tAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGc                  <  1:2819841/100‑1 (MQ=255)

                                                                             tAAGTTGGAGTCATTACCGACAATACGTACACTTGAGATCAGCATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTc                             <  2:2188363/89‑1 (MQ=255)

                                                                                gTTGGAGTCATTACCGACAATACATACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACt               >  1:5533108/1‑100 (MQ=255)

                                                                                 ttGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATAc                         <  2:2493313/89‑1 (MQ=255)

                                                                                 ttGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACta              <  1:1104427/100‑1 (MQ=255)

                                                                                   ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtata            >  1:1824103/1‑100 (MQ=255)

                                                                                    gAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtatat           >  1:538744/1‑100 (MQ=255)

                                                                                    gAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtatat           >  1:90387/1‑100 (MQ=255)

                                                                                      gTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATAc         >  1:1726239/1‑100 (MQ=255)

                                                                                        cATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGc                  >  2:1075034/1‑89 (MQ=255)

                                                                                        cATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGc                  >  2:719437/1‑89 (MQ=255)

                                                                                        cATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTg       >  1:1211308/1‑100 (MQ=255)

                                                                                            aCCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACta              >  2:2927070/1‑89 (MQ=255)

                                                                                             ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtat             <  2:3425854/89‑1 (MQ=255)

                                                                                             ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGCGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGt  >  1:802053/1‑100 (MQ=255)

AGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGT  >  NC_000913/1050451‑1050643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.