mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.6% | 648.5 / inf | 556 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 1383 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 566777 = | NA (NA) | 63 (0.280) | 46/184 | 6.2 | 24.5% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 196 (0.860) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 315229 = | NA (NA) | 72 (0.330) +TCA |
43/180 | 6.5 | 27.5% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 196 (0.860) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 147 (1.220) +44 bp |
13/98 | 9.1 | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 411214 | NA (NA) | 18 (0.140) +42 bp |
9/102 | 11.5 | NA | noncoding (34/37 nt) | other | REP35c |
| ? | NC_000913 | = 4296280 | NA (NA) | noncoding (2/34 nt) | other | REP321h | |||||
| * | ? | NC_000913 | = 411214 | NA (NA) | 18 (0.140) +42 bp |
9/102 | 11.5 | NA | noncoding (34/37 nt) | other | REP35c |
| ? | NC_000913 | = 4295941 | NA (NA) | noncoding (2/34 nt) | other | REP321b | |||||
| * | ? | NC_000913 | = 4296280 | NA (NA) | 19 (0.150) +41 bp |
9/104 | 11.7 | NA | noncoding (2/34 nt) | other | REP321h |
| ? | NC_000913 | = 4296433 | NA (NA) | noncoding (35/37 nt) | other | REP321k | |||||
| * | ? | NC_000913 | = 4296167 | NA (NA) | 19 (0.150) +41 bp |
9/104 | 11.7 | NA | noncoding (2/34 nt) | other | REP321f |
| ? | NC_000913 | = 4296433 | NA (NA) | noncoding (35/37 nt) | other | REP321k | |||||
| * | ? | NC_000913 | = 3297035 | NA (NA) | 19 (0.150) +40 bp |
9/106 | 11.9 | NA | noncoding (36/37 nt) | other | REP240a |
| ? | NC_000913 | = 4296280 | NA (NA) | noncoding (2/34 nt) | other | REP321h | |||||
| * | ? | NC_000913 | = 3297035 | NA (NA) | 19 (0.150) +40 bp |
9/106 | 11.9 | NA | noncoding (36/37 nt) | other | REP240a |
| ? | NC_000913 | = 4295941 | NA (NA) | noncoding (2/34 nt) | other | REP321b | |||||
| * | ? | NC_000913 | = 2340349 | NA (NA) | 19 (0.150) +40 bp |
9/106 | 11.9 | NA | noncoding (36/37 nt) | other | REP163a |
| ? | NC_000913 | = 4296280 | NA (NA) | noncoding (2/34 nt) | other | REP321h | |||||