| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1229368 = | 81 (0.930) | 5 (0.060) | 4/254 | NT | 5.8% | intergenic (+92/+115) | ycgN/hlyE | PF03693 family protein YcgN/hemolysin E |
| ? | NC_000913 | 1229409 = | 87 (1.080) | intergenic (+133/+74) | ycgN/hlyE | PF03693 family protein YcgN/hemolysin E | |||||
AAAAGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1229527‑1229368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaactctcaATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCATTACAGGTGTTAATCATTT > NC_000913/1229409‑1229556 AAAAGACACGGTAAACAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGG < 2:189176/150‑1AAAAGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGG > 2:725749/1‑150 AAAGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGG < 1:1301160/150‑1 AAAGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGG > 1:1122317/1‑150 AAGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGg < 2:1278256/150‑2 AAGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGT > 2:747676/1‑150 AGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTA < 1:1530474/150‑1 ACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAAC < 1:725749/150‑1 CACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACT > 2:388394/1‑150 GGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTC > 1:424406/1‑150 GTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCA < 2:424406/150‑1 TTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGA > 2:538480/1‑150 AAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAG < 1:368133/97‑1 AAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAG > 2:368133/1‑97 AAGATTGAGAGTTACCTGTTGATAATAA‑‑‑‑‑‑‑GGTAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCG > 1:24492/1‑150 TAAGGTATCGGGTAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCA < 1:538480/150‑1 GGTAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCATTACAGGTGT > 1:828424/1‑150 GTAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCATTACAGGTGTT < 1:586501/150‑1 TAACTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCATTACAGGTGTTA < 1:986451/150‑1 CTCTCAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCATTACAGGTGTTAATC > 2:349446/1‑150 CAATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCATTACAGGTGTTAATCATTT > 1:292721/1‑150 AAAAGACACGGTAAAAAGACACTCTTTGAGGTACCTGAAGTCTGATAAGCGATTATTCTCTCCATGTACTCAAGGTATAAGGTTTATCACATTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1229527‑1229368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaactctcaATCTTTAAAAAACGTCTGTGTTTTTAAATGTGATAAACCTTATACCTTGAGTACATGGAGAGAATAATCGCTTATCAGACTTCAGGTACCTCAAAGAGTGTCTTTTTACCGTGTCTTTTCTGATACTCATTACAGGTGTTAATCATTT > NC_000913/1229409‑1229556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |