New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1463439 =	83 (0.950)	6 (0.070)	5/262	NT	7.0%	intergenic (+1/‑100)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
	?	NC_000913	1463490 =	81 (0.980)					intergenic (+52/‑49)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX

CACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1463593‑1463439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatacgACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCCCAT  >  NC_000913/1463490‑1463637                                                                                                                                                                                                                                                                                                                    CACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CG                                                                                                                                                           >  2:243754/1‑150  ACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGA                                                                                                                                                          >  2:97420/1‑150   CTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGAT                                                                                                                                                         <  2:854808/150‑1    TGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATA                                                                                                                                                        <  2:1430949/150‑1                                             AGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAG                                                                                                               >  2:1500210/1‑150                                                                                                      GGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTAATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCC                                                      >  2:431256/1‑150                                                                                                        TCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACCACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGGTCCGG                                                    >  2:277933/1‑150                                                                                                                     TGGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCAC                                          >  1:799702/1‑150                                                                                                                       GCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTT                                     >  1:1405403/1‑150                                                                                                                       GCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTT                                     >  2:1122649/1‑150                                                                                                                                                         GATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTC      <  1:854808/150‑1                                                                                                                                                         GATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTC      >  2:255852/1‑150                                                                                                                                                          ATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCC     <  1:910760/150‑1                                                                                                                                                             CGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCCCAT  >  2:29053/1‑150                                                                                                                                                                                                                                                                                                                    CACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1463593‑1463439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatacgACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCCCAT  >  NC_000913/1463490‑1463637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.