New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 647732	73 (0.790)	4 (0.040)	4/270	NT	5.2%	coding (304/552 nt)	citX	apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase
	?	NC_000913	= 647767	75 (0.830)					coding (269/552 nt)	citX	apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase

GCGCTTTGTTCGCACAACAGGCAGCGGCGAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/647581‑647732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgGGCCGGAGGGCATGTTGAGCATTGCCGCCCCGGCTCGCGACCTCAAGCTCGCCACCATTGAGCTTGAACATAGTCATCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCTCCCGCCGCGACTATTCA  <  NC_000913/647767‑647619                                                                                                                                                                                                                                                                                                               GCGCTTTGTTCGCACAACAGGCAGCGGCGAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCG                                                                                                                                                         >  1:921235/1‑150  CGCTTTGTTCGCACAACAGGCAGCGGCGAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGC                                                                                                                                                        >  1:1330526/1‑150                                   GCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGAGGGCATGTTGAGCATTGCCGCCCCG                                                                                                                       <  2:398334/150‑1                                             GTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGGGCCGGAGGGCATGTTGAGCATTGCCGCCCCGGCTCGCGACC                                                                                                             <  2:1312782/150‑1                                                                                   CATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGGGCCGGAGGGCATGTTGAGCATTGCCGCCCCGGCTCG                                                                                                                  >  1:610709/1‑107                                                                                   CATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGGGCCGGAGGGCATGTTGAGCATTGCCGCCCCGGCTCG                                                                                                                  <  2:610709/107‑1                                                                                                                                                       CGGGCCGGAGGGCATGTTGAGCATTGCCGCCCCGGCTCGCGACCTCAAGCTCGCCACCATTGAGCTTGAACATAGTCATCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCTCCCGCCGCGACTATTC   >  2:40093/1‑150                                                                                                                                                        GGGCCGGAGGGCATGTTGAGCATTGCCGCCCCGGCTCGCGACCTCAAGCTCGCCACCATTGAGCTTGAACATAGTCATCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCTCCCGCCGCGACTATTCA  >  1:1323070/1‑150                                                                                                                                                                                                                                                                                                               GCGCTTTGTTCGCACAACAGGCAGCGGCGAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/647581‑647732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgGGCCGGAGGGCATGTTGAGCATTGCCGCCCCGGCTCGCGACCTCAAGCTCGCCACCATTGAGCTTGAACATAGTCATCCTCTCGGGCGGTTATGGGATATCGATGTCCTGACGCCCGAAGGCGAAATTCTCTCCCGCCGCGACTATTCA  <  NC_000913/647767‑647619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.