New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2771953 =	102 (1.110)	8 (0.090)	7/260	NT	7.8%	coding (202/315 nt)	yfjU	CP4‑57 prophage; ArsC family protein YfjU
	?	NC_000913	2771980 =	93 (1.070)					coding (175/315 nt)	yfjU	CP4‑57 prophage; ArsC family protein YfjU

CAACACGCTGGAGATGCTTCATAACAACGGCAACGAACCGACAATAATTAATTATCTCGATATGCCACCGACCCGTGATGAACTGATTAAACTTATTTCAGATATCTTCAGTGACAAAATCATCGAGTGCATCAGGGAGCAATGTCACCTGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2772107‑2771953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgatgcACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGG  >  NC_000913/2771980‑2772128                                                                                                                                                                                                                                                                                                                  CAACACGCTGGAGATGCTTCATAACAACGGCAACGAACCGACAATAATTAATTATCTCGATATGCCACCGACCCGTGATGAACTGATTAAACTTATTTCAGATATCTTCAGTGACAAAATCATCGAGTGCATCAGGGAGCAATGTCACCT                                                                                                                                                            <  2:333817/150‑1  AACACGCTGGAGATGCTTCATAACAACGGCAACGAACCGACAATAATTAATTATCTCGATATGCCACCGACCCGTGATGAACTGATTAAACTTATTTCAGATATCTTCAGTGACAAAATCATCGAGTGCATCAGGGAGCAATGTCACCTG                                                                                                                                                           >  1:233876/1‑150   ACACGCTGGAGATGCTTCATAACAACGGCAACGAACCGACAATAATTAATTATCTCGATATGCCACCGACCCGTGATGAACTGATTAAACTTATTTCAGATATCTTCAGTGACAAAATCATCGAGTGCATCAGGGAGCAATGTCACCTGA                                                                                                                                                          >  2:893034/1‑150                                                                                                 TTCAGATATCTTCAGTGACAAAATCATCGAGTGCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGG                                                            >  1:1361375/1‑150                                                                                                        ATCTTCAGTGACAAAATCATCGAGTGCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTG                                                     <  2:1361375/150‑1                                                                                                                     AAATCATCGAGTGCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAA                                        >  1:937987/1‑150                                                                                                                              AGTGCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTATGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCA                               >  2:972824/1‑150                                                                                                                               GTGCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAG                              >  2:1124938/1‑150                                                                                                                                TGCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGC                             >  2:351784/1‑150                                                                                                                                 GCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCG                            >  1:680838/1‑150                                                                                                                                 GCATCAGGGAGCAATGTCACCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCG                            >  2:240108/1‑150                                                                                                                                                    CCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACA         >  1:419020/1‑150                                                                                                                                                      TGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGG       >  2:799060/1‑150                                                                                                                                                      TGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAG                                                                              >  1:29532/1‑79                                                                                                                                                      TGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAG                                                                              <  2:29532/79‑1                                                                                                                                                           CACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGG  <  1:799060/150‑1                                                                                                                                                                                                                                                                                                                  CAACACGCTGGAGATGCTTCATAACAACGGCAACGAACCGACAATAATTAATTATCTCGATATGCCACCGACCCGTGATGAACTGATTAAACTTATTTCAGATATCTTCAGTGACAAAATCATCGAGTGCATCAGGGAGCAATGTCACCTGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2772107‑2771953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgatgcACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGG  >  NC_000913/2771980‑2772128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.