New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2327312	42 (0.950)	4 (0.100)	4/238	NT	9.2%	intergenic (+19/+55)	atoB/yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP
	?	NC_000913	= 2327320	41 (1.020)					intergenic (+27/+47)	atoB/yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP

GCTCGTATTCTGGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATC  >  NC_000913/2327174‑2327452                                                                                                                                           |                                                                                                                                             gCTCGTATTCTGGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGCTAACTTACTCAATAACAACATCCGATAGCgc                                                                                                                                          >  2:442313/1‑142 (MQ=255)   tCGTATTCTGGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGcaa                                                                                                                                        >  1:764098/1‑143 (MQ=255)   tCGTATTCTGGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGaaa                                                                                                                                        >  1:323729/1‑143 (MQ=255)           tGGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAactttcgctatcgg                                                                                                                                <  1:448265‑M1/143‑15 (MQ=255)            ggTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTtatcggg                                                                                                                               <  1:708272‑M2/143‑8 (MQ=255)                  acTATTACATGCCATGTAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCGGGGGGGGGCGATGGTGATTGAACGGTTGAATTAATCAATACAAACACCCGATAGCGAAAGTtatcgggtgtttt                                                                                                                         <  1:329339‑M2/143‑14 (MQ=255)                  acTATTACATGCCAGGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAactttcgctatcgggtgtttt                                                                                                                         <  1:754556‑M1/143‑22 (MQ=255)                    tATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATCAAAACACCCGATAGCGGAAGTTATCGGGTGTTTTCt                                                                                                                       >  2:27814/1‑143 (MQ=255)                    tATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTACGACGGTGATTGAACGGCTGTTTTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCt                                                                                                                       >  1:240820/1‑143 (MQ=255)                          atgccatgcAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACa                                                                                                                 >  2:640492/1‑143 (MQ=255)                              catgcAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGTACTCGCGATGGTGATTGAACGGTTTAATTAATCAATAAAAAAAACCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGa                                                                                                             >  1:134297/1‑143 (MQ=255)                              catgcAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGa                                                                                                             >  1:832841/1‑143 (MQ=255)                                           gATAAAACGCTGGGGCTGGCAACACGATGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTGGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGGGTTTTCTTGAACATCGACGGCGAAGGTGAc                                                                                                >  1:268724/1‑143 (MQ=255)                                             tAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTAGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAAccc                                                                                              >  2:426546/1‑143 (MQ=255)                                                agcGCTGGGGCTGGGAACACTGTGCATTGGCGGCGGTCAGGGAAGTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCAt                                                                                           <  2:466661/141‑1 (MQ=255)                                                      ggggCGGGCAACGCAGGGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCa                                                                                     <  1:223631/143‑1 (MQ=255)                                                       gggCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGGCGGCGAAGGTAACCCCATCAATCAc                                                                                    >  2:472037/1‑143 (MQ=255)                                                       gggCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCAc                                                                                    <  1:415208/143‑1 (MQ=255)                                                          gtGGGAAGACTGTGCATTGGCGGCGGTCAGGGAAGTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGAGAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGTCGAAGGTAACCCCATTAATCAccgg                                                                                 <  2:866774/142‑3 (MQ=255)                                                               aaCACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAactttcgctatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccct                                                                                <  2:159003‑M1/139‑63 (MQ=255)                                                               aaCACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAactttcgctatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccct                                                                                >  1:159003‑M1/1‑77 (MQ=255)                                                               aaCACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGGTATCGGGTGTTTTCTTGAACATGGACGGCGAAGGGAACCCGCGTAATCACCAGTCaaa                                                                            >  2:873880/1‑143 (MQ=255)                                                                acacTGTGCATGGGCGGCGGTAAGGGAATTGCGATTGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCaaaa                                                                           <  2:365966/143‑1 (MQ=255)                                                                  acTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAAGAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACt                                                                         <  2:425367/143‑1 (MQ=255)                                                                   cTGTGGATGCGCGTCGGTCAGCGAAGTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTCTATTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACtt                                                                        <  2:378327/143‑1 (MQ=255)                                                                   cTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACtt                                                                        <  2:253056/143‑1 (MQ=255)                                                                         cttGGCCGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCAcc                                                                  <  2:175124/142‑1 (MQ=255)                                                                            tgcggcgGTGAGTGAGTGGCGATGGGGATTGAGGGGTTGAATTGATCAATAAAAACACCCGATAGCGACAGTTGTCGGGTGGTTGCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCGAAACTTTTCACCAGc                                                               <  2:328564/142‑1 (MQ=255)                                                                              cggcggTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGt                                                             <  1:428852/143‑1 (MQ=255)                                                                                    tCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTc                                                       >  2:210368/1‑143 (MQ=255)                                                                                      aGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgtt                                                         <  2:159003‑M2/139‑78 (MQ=255)                                                                                      aGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgtt                                                         >  1:159003‑M2/1‑62 (MQ=255)                                                                                       gggAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGcc                                                    >  1:368090/1‑143 (MQ=255)                                                                                        ggAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCGATCAAACACCACTCAAAACTTTTCACCAGCGTCAGCTCGCCa                                                   >  2:181700/1‑143 (MQ=255)                                                                                          aaTTGCGATGGTGATTGAACGGTTGAATTAATCAATCAAAACAGCCTACAGCGAACGTTATCGTGTGCTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCTCCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGc                                                 <  1:785365/143‑1 (MQ=255)                                                                                          aaTTGCGATGGTGATTGAACGGGTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGc                                                 <  1:455731/143‑1 (MQ=255)                                                                                           aTTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCCTTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCa                                                <  1:112137/143‑1 (MQ=255)                                                                                            ttGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATGGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCAt                                               >  1:530578/1‑143 (MQ=255)                                                                                              cgggtGGTGATTGCACGGTTGACTTAATCAATAAAAGCACCCGATCGCGAACGTTTTCGCGTGTTCTCTGCAACCTCGACGGCCAAGGTAACCCCATTAATCACCAGTCCACACTTTTCACCAGCGTCAGCTCGCCAGCATTa                                             <  2:78087/139‑1 (MQ=255)                                                                                                 attgttaTTTAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGCGTGTTTTCTTGAACATCTACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGc                                          <  1:242573/137‑1 (MQ=255)                                                                                                     tGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGCAAGTTATCGGGTGTTTTCTTCAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCg                                      <  2:205815/143‑1 (MQ=255)                                                                                                      gATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGCTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTCATCACCCGTCAAAACTTTTCACCAGCGTCAGCTCGCCACCATTACCCATCgg                                     >  2:304697/1‑143 (MQ=255)                                                                                                       aTTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCTAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGt                                    <  1:736066/143‑1 (MQ=255)                                                                                                                   aaTTAATCAATAAAAACACCCGATAGCGACAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGtt                        <  1:566640/143‑1 (MQ=255)                                                                                                                    aTTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCATGAACATCGACGGCGAAGGTAACCCGATTACTCACCAGTCACAACTTTGCACCACCGTCAGCTCGCCAGCATTCCGCATCTGTACAAGAAATGctt                       >  2:78435/1‑143 (MQ=255)                                                                                                                     ttAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCAGTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCACCAGCATTACGCATCGGTACACTAAGTGGTTc                      >  2:325100/1‑143 (MQ=255)                                                                                                                       aaTCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCCTTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCt                    >  1:788167/1‑143 (MQ=255)                                                                                                                        aTCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACACTAAATGTTTCCTg                   >  1:565735/1‑143 (MQ=255)                                                                                                                           aaTAAAAACACCCGGTAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGttt                <  2:456376/143‑1 (MQ=255)                                                                                                                             tAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGCACACCGACGGCGAAGGTAACCCCATGAATCACCAGTCAAAACTTTTCACCCGCGTCAGCTCGCCAGCATTACGCATCTCTACAATAAATGTTTCCTgctcct              >  2:100458/1‑138 (MQ=255)                                                                                                                               aaaaCACCCGATAactttcgctatcgggtgtttgtattgattaattcaaccgttcaatcaccatcgcccccccccgaccgccgccaatgcacagtgttgccagccccagcgttttatcgcgtgcctacatggcatgtaatagt            <  1:329339‑M1/143‑131 (MQ=255)                                                                                                                               aaaaCACCCGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgttgccagccccagcgttttatcgcgtgcctgcctggcatgtaatagt            <  1:754556‑M2/143‑123 (MQ=255)                                                                                                                                     cccGATAactttcgctatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgttgccagccccagcgttttatcgcgtgcctgcatggcatgtaatagtgtgacc      <  1:708272‑M1/143‑137 (MQ=255)                                                                                                                                      ccGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgttgccagccccagcgttttatcgcgtgcctgcatggcatgtaatagtgtgacca     <  1:448265‑M2/143‑130 (MQ=255)                                                                                                                                      ccGATAGCGAAAGTTATCGGGTGTTTTCTTGAACCTCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCCTTCCGCATCGGTACAATAAATGTTTCCTGTTTCCCATTGAccc     >  2:401279/1‑142 (MQ=255)                                                                                                                                         aTAGCGAAAGTTATCTGGTGTTTTATTTAACATCGCCGGCGCAGGTATCCCCATTAATCACCAGTCAAAACTGTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATc  <  2:816412/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             GCTCGTATTCTGGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATC  >  NC_000913/2327174‑2327452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.