New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2327312	42 (0.950)	4 (0.100)	4/238	NT	9.2%	intergenic (+19/+55)	atoB/yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP
	?	NC_000913	= 2327320	41 (1.020)					intergenic (+27/+47)	atoB/yfaP	acetyl‑CoA acetyltransferase/DUF2135 domain‑containing protein YfaP

GGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATCCTTCATCGGT  >  NC_000913/2327185‑2327462                                                                                                                                        |                                                                                                                                               ggTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTtatcggg                                                                                                                                         <  1:708272‑M2/143‑8 (MQ=255)       acTATTACATGCCATGTAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCGGGGGGGGGCGATGGTGATTGAACGGTTGAATTAATCAATACAAACACCCGATAGCGAAAGTtatcgggtgtttt                                                                                                                                   <  1:329339‑M2/143‑14 (MQ=255)         tATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATCAAAACACCCGATAGCGGAAGTTATCGGGTGTTTTCt                                                                                                                                 >  2:27814/1‑143 (MQ=255)         tATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTACGACGGTGATTGAACGGCTGTTTTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCt                                                                                                                                 >  1:240820/1‑143 (MQ=255)               atgccatgcAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACa                                                                                                                           >  2:640492/1‑143 (MQ=255)                   catgcAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGTACTCGCGATGGTGATTGAACGGTTTAATTAATCAATAAAAAAAACCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGa                                                                                                                       >  1:134297/1‑143 (MQ=255)                   catgcAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGa                                                                                                                       >  1:832841/1‑143 (MQ=255)                                gATAAAACGCTGGGGCTGGCAACACGATGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTGGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGGGTTTTCTTGAACATCGACGGCGAAGGTGAc                                                                                                          >  1:268724/1‑143 (MQ=255)                                  tAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTAGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAAccc                                                                                                        >  2:426546/1‑143 (MQ=255)                                     agcGCTGGGGCTGGGAACACTGTGCATTGGCGGCGGTCAGGGAAGTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCAt                                                                                                     <  2:466661/141‑1 (MQ=255)                                           ggggCGGGCAACGCAGGGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCa                                                                                               <  1:223631/143‑1 (MQ=255)                                            gggCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGGCGGCGAAGGTAACCCCATCAATCAc                                                                                              >  2:472037/1‑143 (MQ=255)                                            gggCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCAc                                                                                              <  1:415208/143‑1 (MQ=255)                                               gtGGGAAGACTGTGCATTGGCGGCGGTCAGGGAAGTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGAGAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGTCGAAGGTAACCCCATTAATCAccgg                                                                                           <  2:866774/142‑3 (MQ=255)                                                    aaCACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGGTATCGGGTGTTTTCTTGAACATGGACGGCGAAGGGAACCCGCGTAATCACCAGTCaaa                                                                                      >  2:873880/1‑143 (MQ=255)                                                     acacTGTGCATGGGCGGCGGTAAGGGAATTGCGATTGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCaaaa                                                                                     <  2:365966/143‑1 (MQ=255)                                                       acTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAAGAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACt                                                                                   <  2:425367/143‑1 (MQ=255)                                                        cTGTGGATGCGCGTCGGTCAGCGAAGTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTCTATTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACtt                                                                                  <  2:378327/143‑1 (MQ=255)                                                        cTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACtt                                                                                  <  2:253056/143‑1 (MQ=255)                                                              cttGGCCGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCAcc                                                                            <  2:175124/142‑1 (MQ=255)                                                                 tgcggcgGTGAGTGAGTGGCGATGGGGATTGAGGGGTTGAATTGATCAATAAAAACACCCGATAGCGACAGTTGTCGGGTGGTTGCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCGAAACTTTTCACCAGc                                                                         <  2:328564/142‑1 (MQ=255)                                                                   cggcggTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGt                                                                       <  1:428852/143‑1 (MQ=255)                                                                         tCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTc                                                                 >  2:210368/1‑143 (MQ=255)                                                                           aGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgtt                                                                   <  2:159003‑M2/139‑78 (MQ=255)                                                                           aGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgtt                                                                   >  1:159003‑M2/1‑62 (MQ=255)                                                                            gggAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGcc                                                              >  1:368090/1‑143 (MQ=255)                                                                             ggAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCGATCAAACACCACTCAAAACTTTTCACCAGCGTCAGCTCGCCa                                                             >  2:181700/1‑143 (MQ=255)                                                                               aaTTGCGATGGTGATTGAACGGTTGAATTAATCAATCAAAACAGCCTACAGCGAACGTTATCGTGTGCTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCTCCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGc                                                           <  1:785365/143‑1 (MQ=255)                                                                               aaTTGCGATGGTGATTGAACGGGTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGc                                                           <  1:455731/143‑1 (MQ=255)                                                                                aTTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCCTTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCa                                                          <  1:112137/143‑1 (MQ=255)                                                                                 ttGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATGGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCAt                                                         >  1:530578/1‑143 (MQ=255)                                                                                   cgggtGGTGATTGCACGGTTGACTTAATCAATAAAAGCACCCGATCGCGAACGTTTTCGCGTGTTCTCTGCAACCTCGACGGCCAAGGTAACCCCATTAATCACCAGTCCACACTTTTCACCAGCGTCAGCTCGCCAGCATTa                                                       <  2:78087/139‑1 (MQ=255)                                                                                      attgttaTTTAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGCGTGTTTTCTTGAACATCTACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGc                                                    <  1:242573/137‑1 (MQ=255)                                                                                          tGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGCAAGTTATCGGGTGTTTTCTTCAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCg                                                <  2:205815/143‑1 (MQ=255)                                                                                           gATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGCTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTCATCACCCGTCAAAACTTTTCACCAGCGTCAGCTCGCCACCATTACCCATCgg                                               >  2:304697/1‑143 (MQ=255)                                                                                            aTTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCTAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGt                                              <  1:736066/143‑1 (MQ=255)                                                                                                        aaTTAATCAATAAAAACACCCGATAGCGACAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGtt                                  <  1:566640/143‑1 (MQ=255)                                                                                                         aTTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCATGAACATCGACGGCGAAGGTAACCCGATTACTCACCAGTCACAACTTTGCACCACCGTCAGCTCGCCAGCATTCCGCATCTGTACAAGAAATGctt                                 >  2:78435/1‑143 (MQ=255)                                                                                                          ttAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCAGTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCACCAGCATTACGCATCGGTACACTAAGTGGTTc                                >  2:325100/1‑143 (MQ=255)                                                                                                            aaTCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCCTTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCt                              >  1:788167/1‑143 (MQ=255)                                                                                                             aTCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACACTAAATGTTTCCTg                             >  1:565735/1‑143 (MQ=255)                                                                                                                aaTAAAAACACCCGGTAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGttt                          <  2:456376/143‑1 (MQ=255)                                                                                                                  tAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGCACACCGACGGCGAAGGTAACCCCATGAATCACCAGTCAAAACTTTTCACCCGCGTCAGCTCGCCAGCATTACGCATCTCTACAATAAATGTTTCCTgctcct                        >  2:100458/1‑138 (MQ=255)                                                                                                                    aaaaCACCCGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgttgccagccccagcgttttatcgcgtgcctgcctggcatgtaatagt                      <  1:754556‑M2/143‑123 (MQ=255)                                                                                                                           ccGATAGCGAAAGTtatcgggtgtttttattgattaattcaaccgttcaatcaccatcgcaattccctgaccgccgccaatgcacagtgttgccagccccagcgttttatcgcgtgcctgcatggcatgtaatagtgtgacca               <  1:448265‑M2/143‑130 (MQ=255)                                                                                                                           ccGATAGCGAAAGTTATCGGGTGTTTTCTTGAACCTCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCCTTCCGCATCGGTACAATAAATGTTTCCTGTTTCCCATTGAccc               >  2:401279/1‑142 (MQ=255)                                                                                                                              aTAGCGAAAGTTATCTGGTGTTTTATTTAACATCGCCGGCGCAGGTATCCCCATTAATCACCAGTCAAAACTGTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATc            <  2:816412/143‑1 (MQ=255)                                                                                                                                 gtgAAAGGTATGGGGTGGTTTCTTGAACACCGACGGCGAAGGTAACCCCATTAATCACCCGTCACAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATCCtt         <  1:786305/141‑1 (MQ=255)                                                                                                                                   gAAAGTTATCGGGTGTTTTCTTGACCATCGACGGCGAAGGTAACCCCATTATTCACCCGTCAAACCTTTTCTCCAGCGTCAGCTCGCCAGCCTTACGCATCGGTACAATAAATGTTCCCTGTTTCTCATTGACCGATCCTTCa       <  1:467920/143‑1 (MQ=255)                                                                                                                                    aaaGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGGACAATACAGGTTTCCGGGTTGTCAGTGACCGATCCGTCAt      >  1:63131/1‑143 (MQ=255)                                                                                                                                       gTTATGGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATCCTTCATCgg   <  2:530578/143‑1 (MQ=255)                                                                                                                                        ttATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATCCTTCATCGGt  >  2:378064/1‑143 (MQ=255)                                                                                                                                        |                                                                                                                                               GGTCACACTATTACATGCCATGCAGGCACGCGATAAAACGCTGGGGCTGGCAACACTGTGCATTGGCGGCGGTCAGGGAATTGCGATGGTGATTGAACGGTTGAATTAATCAATAAAAACACCCGATAGCGAAAGTTATCGGGTGTTTTCTTGAACATCGACGGCGAAGGTAACCCCATTAATCACCAGTCAAAACTTTTCACCAGCGTCAGCTCGCCAGCATTACGCATCGGTACAATAAATGTTTCCTGTTTCTCATTGACCGATCCTTCATCGGT  >  NC_000913/2327185‑2327462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.